Literature DB >> 24098094

The accuracy of quantum chemical methods for large noncovalent complexes.

Robert Sedlak1, Tomasz Janowski, Michal Pitoňák, Jan Rezáč, Peter Pulay, Pavel Hobza.   

Abstract

We evaluate the performance of the most widely used wavefunction, density functional theory, and semiempirical methods for the description of noncovalent interactions in a set of larger, mostly dispersion-stabilized noncovalent complexes (the L7 data set). The methods tested include MP2, MP3, SCS-MP2, SCS(MI)-MP2, MP2.5, MP2.X, MP2C, DFT-D, DFT-D3 (B3-LYP-D3, B-LYP-D3, TPSS-D3, PW6B95-D3, M06-2X-D3) and M06-2X, and semiempirical methods augmented with dispersion and hydrogen bonding corrections: SCC-DFTB-D, PM6-D, PM6-DH2 and PM6-D3H4. The test complexes are the octadecane dimer, the guanine trimer, the circumcoroneneadenine dimer, the coronene dimer, the guanine-cytosine dimer, the circumcoroneneguanine-cytosine dimer, and an amyloid fragment trimer containing phenylalanine residues. The best performing method is MP2.5 with relative root mean square deviation (rRMSD) of 4 %. It can thus be recommended as an alternative to the CCSD(T)/CBS (alternatively QCISD(T)/CBS) benchmark for molecular systems which exceed current computational capacity. The second best non-DFT method is MP2C with rRMSD of 8 %. A method with the most favorable "accuracy/cost" ratio belongs to the DFT family: BLYP-D3, with an rRMSD of 8 %. Semiempirical methods deliver less accurate results (the rRMSD exceeds 25 %). Nevertheless, their absolute errors are close to some much more expensive methods such as M06-2X, MP2 or SCS(MI)-MP2, and thus their price/performance ratio is excellent.

Entities:  

Year:  2013        PMID: 24098094      PMCID: PMC3789125          DOI: 10.1021/ct400036b

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  45 in total

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Authors:  Kevin E Riley; Jan Řezáč; Pavel Hobza
Journal:  Phys Chem Chem Phys       Date:  2011-10-24       Impact factor: 3.676

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Journal:  J Chem Theory Comput       Date:  2005-05       Impact factor: 6.006

4.  Efficient and Accurate Double-Hybrid-Meta-GGA Density Functionals-Evaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions.

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Journal:  J Chem Theory Comput       Date:  2010-12-23       Impact factor: 6.006

5.  Design of density functionals that are broadly accurate for thermochemistry, thermochemical kinetics, and nonbonded interactions.

Authors:  Yan Zhao; Donald G Truhlar
Journal:  J Phys Chem A       Date:  2005-06-30       Impact factor: 2.781

6.  Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared with ab initio quantum mechanics calculations.

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7.  Further analysis and comparative study of intermolecular interactions using dimers from the S22 database.

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Journal:  J Chem Phys       Date:  2009-08-14       Impact factor: 3.488

8.  Improvement of the coupled-cluster singles and doubles method via scaling same- and opposite-spin components of the double excitation correlation energy.

Authors:  Tait Takatani; Edward G Hohenstein; C David Sherrill
Journal:  J Chem Phys       Date:  2008-03-28       Impact factor: 3.488

9.  A thorough benchmark of density functional methods for general main group thermochemistry, kinetics, and noncovalent interactions.

Authors:  Lars Goerigk; Stefan Grimme
Journal:  Phys Chem Chem Phys       Date:  2011-03-07       Impact factor: 3.676

10.  Effect of the damping function in dispersion corrected density functional theory.

Authors:  Stefan Grimme; Stephan Ehrlich; Lars Goerigk
Journal:  J Comput Chem       Date:  2011-03-01       Impact factor: 3.376

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  31 in total

1.  Density functional tight binding: values of semi-empirical methods in an ab initio era.

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Journal:  Phys Chem Chem Phys       Date:  2014-07-28       Impact factor: 3.676

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3.  Nucleic acid reactivity: challenges for next-generation semiempirical quantum models.

Authors:  Ming Huang; Timothy J Giese; Darrin M York
Journal:  J Comput Chem       Date:  2015-05-06       Impact factor: 3.376

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Authors:  A Suvitha; N S Venkataramanan; R Sahara; Y Kawazoe
Journal:  J Mol Model       Date:  2019-02-08       Impact factor: 1.810

Review 5.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

6.  Hydrogen-Bond-Dependent Conformational Switching: A Computational Challenge from Experimental Thermochemistry.

Authors:  James Luccarelli; Robert S Paton
Journal:  J Org Chem       Date:  2019-01-09       Impact factor: 4.354

7.  Optimization of the linear-scaling local natural orbital CCSD(T) method: Redundancy-free triples correction using Laplace transform.

Authors:  Péter R Nagy; Mihály Kállay
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

8.  Contribution of phenylalanine side chain intercalation to the TATA-box binding protein-DNA interaction: molecular dynamics and dispersion-corrected density functional theory studies.

Authors:  Manas Mondal; Sanchita Mukherjee; Dhananjay Bhattacharyya
Journal:  J Mol Model       Date:  2014-10-30       Impact factor: 1.810

9.  Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization.

Authors:  Anders S Christensen; Marcus Elstner; Qiang Cui
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

10.  Theoretical study of adsorption of nitrogen-containing environmental contaminants on kaolinite surfaces.

Authors:  Andrea Michalkova Scott; Elizabeth A Burns; Frances C Hill
Journal:  J Mol Model       Date:  2014-07-17       Impact factor: 1.810

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