Literature DB >> 26273974

Low-Cost Quantum Chemical Methods for Noncovalent Interactions.

Jan Gerit Brandenburg1, Manuel Hochheim1, Thomas Bredow1, Stefan Grimme1.   

Abstract

The efficient and reasonably accurate description of noncovalent interactions is important for various areas of chemistry, ranging from supramolecular host-guest complexes and biomolecular applications to the challenging task of crystal structure prediction. While London dispersion inclusive density functional theory (DFT-D) can be applied, faster "low-cost" methods are required for large-scale applications. In this Perspective, we present the state-of-the-art of minimal basis set, semiempirical molecular-orbital-based methods. Various levels of approximations are discussed based either on canonical Hartree-Fock or on semilocal density functionals. The performance for intermolecular interactions is examined on various small to large molecular complexes and organic solids covering many different chemical groups and interaction types. We put the accuracy of low-cost methods into perspective by comparing with first-principle density functional theory results. The mean unsigned deviations of binding energies from reference data are typically 10-30%, which is only two times larger than those of DFT-D. In particular, for neutral or moderately polar systems, many of the tested methods perform very well, while at the same time, computational savings of up to 2 orders of magnitude can be achieved.

Year:  2014        PMID: 26273974     DOI: 10.1021/jz5021313

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  12 in total

1.  On the hydrogen activation by frustrated Lewis pairs in the solid state: benchmark studies and theoretical insights.

Authors:  Lei Liu; Jan Gerit Brandenburg; Stefan Grimme
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-08-28       Impact factor: 4.226

Review 2.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

3.  Intermolecular interactions in the condensed phase: Evaluation of semi-empirical quantum mechanical methods.

Authors:  Anders S Christensen; Jimmy C Kromann; Jan H Jensen; Qiang Cui
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

4.  Analysis of Density Functional Tight Binding with Natural Bonding Orbitals.

Authors:  Xiya Lu; Juan Duchimaza-Heredia; Qiang Cui
Journal:  J Phys Chem A       Date:  2019-08-15       Impact factor: 2.781

5.  Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization.

Authors:  Anders S Christensen; Marcus Elstner; Qiang Cui
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

Review 6.  Enhanced semiempirical QM methods for biomolecular interactions.

Authors:  Nusret Duygu Yilmazer; Martin Korth
Journal:  Comput Struct Biotechnol J       Date:  2015-02-28       Impact factor: 7.271

Review 7.  Small Atomic Orbital Basis Set First-Principles Quantum Chemical Methods for Large Molecular and Periodic Systems: A Critical Analysis of Error Sources.

Authors:  Rebecca Sure; Jan Gerit Brandenburg; Stefan Grimme
Journal:  ChemistryOpen       Date:  2015-11-25       Impact factor: 2.911

8.  In silico identification of genetic mutations conferring resistance to acetohydroxyacid synthase inhibitors: A case study of Kochia scoparia.

Authors:  Yan Li; Michael D Netherland; Chaoyang Zhang; Huixiao Hong; Ping Gong
Journal:  PLoS One       Date:  2019-05-07       Impact factor: 3.240

9.  DFTB3 Parametrization for Copper: The Importance of Orbital Angular Momentum Dependence of Hubbard Parameters.

Authors:  Michael Gaus; Haiyun Jin; Darren Demapan; Anders S Christensen; Puja Goyal; Marcus Elstner; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2015-08-24       Impact factor: 6.006

10.  PEPCONF, a diverse data set of peptide conformational energies.

Authors:  Viki Kumar Prasad; Alberto Otero-de-la-Roza; Gino A DiLabio
Journal:  Sci Data       Date:  2019-01-22       Impact factor: 6.444

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