Literature DB >> 31373822

Analysis of Density Functional Tight Binding with Natural Bonding Orbitals.

Xiya Lu1, Juan Duchimaza-Heredia, Qiang Cui.   

Abstract

The description of chemical bonding by the density functional tight binding (class="Chemical">DFTB) model is analyzed using natural bonding orbitals (NBOs) and compared to results from density functional theory (B3LYP/aug-cc-<class="Chemical">span class="Chemical">pVTZ) calculations. Several molecular systems have been chosen to represent fairly diverse bonding scenarios that include standard covalent bonds, hypervalent interactions, multicenter bonds, metal-ligand interactions (with and without the pseudo-Jahn-Teller effect), and through-space donor-acceptor interactions. Overall, the results suggest that DFTB3/3OB provides physically sound descriptions for the different bonding scenarios analyzed here, as reflected by the general agreement between DFTB3 and B3LYP NBO properties, such as the nature of the NBOs, the magnitudes of natural charges and bond orders, and the dominant donor-acceptor interactions. The degree of ligand-to-metal charge transfer and the ionic nature of pentavalent phosphate are overestimated, likely reflecting the minimal-basis nature of DFTB3/3OB. Moreover, certain orbital interactions, such as geminal interactions, are observed to be grossly overestimated by DFTB3 for hypervalent phosphate and several transition metal compounds that involve copper and nickel. The study indicates that results from NBO analysis can be instructive for identifying electronic structure descriptions at the approximate quantum-mechanical level that require improvement and thus for guiding the systematic improvement of these methods.

Entities:  

Year:  2019        PMID: 31373822      PMCID: PMC7289594          DOI: 10.1021/acs.jpca.9b05072

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  65 in total

1.  Improvement of semiempirical response properties with charge-dependent response density.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2005-10-22       Impact factor: 3.488

2.  Big data analysis of ab Initio molecular integrals in the neglect of diatomic differential overlap approximation.

Authors:  Xin Wu; Pavlo O Dral; Axel Koslowski; Walter Thiel
Journal:  J Comput Chem       Date:  2018-12-14       Impact factor: 3.376

3.  Pseudo-Jahn-teller effect--a two-state paradigm in formation, deformation, and transformation of molecular systems and solids.

Authors:  Isaac B Bersuker
Journal:  Chem Rev       Date:  2013-01-09       Impact factor: 60.622

4.  NBO 6.0: natural bond orbital analysis program.

Authors:  Eric D Glendening; Clark R Landis; Frank Weinhold
Journal:  J Comput Chem       Date:  2013-03-09       Impact factor: 3.376

5.  Generalized Density-Functional Tight-Binding Repulsive Potentials from Unsupervised Machine Learning.

Authors:  Julian J Kranz; Maximilian Kubillus; Raghunathan Ramakrishnan; O Anatole von Lilienfeld; Marcus Elstner
Journal:  J Chem Theory Comput       Date:  2018-04-04       Impact factor: 6.006

6.  n-->pi* interactions in proteins.

Authors:  Gail J Bartlett; Amit Choudhary; Ronald T Raines; Derek N Woolfson
Journal:  Nat Chem Biol       Date:  2010-07-11       Impact factor: 15.040

7.  Effect of 3-hydroxyproline residues on collagen stability.

Authors:  Cara L Jenkins; Lynn E Bretscher; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2003-05-28       Impact factor: 15.419

8.  DFTB3: Extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB).

Authors:  Michael Gaus; Qiang Cui; Marcus Elstner
Journal:  J Chem Theory Comput       Date:  2012-04-10       Impact factor: 6.006

9.  A variational linear-scaling framework to build practical, efficient next-generation orbital-based quantum force fields.

Authors:  Timothy J Giese; Haoyuan Chen; Thakshila Dissanayake; George M Giambaşu; Hugh Heldenbrand; Ming Huang; Erich R Kuechler; Tai-Sung Lee; Maria T Panteva; Brian K Radak; Darrin M York
Journal:  J Chem Theory Comput       Date:  2013-03-12       Impact factor: 6.006

10.  Anomeric effect in "high energy" phosphate bonds. Selective destabilization of the scissile bond and modulation of the exothermicity of hydrolysis.

Authors:  Eliza A Ruben; Joshua A Plumley; Michael S Chapman; Jeffrey D Evanseck
Journal:  J Am Chem Soc       Date:  2008-02-27       Impact factor: 15.419

View more
  2 in total

1.  Improvement of d-d interactions in density functional tight binding for transition metal ions with a ligand field model: assessment of a DFTB3+U model on nickel coordination compounds.

Authors:  Stepan Stepanovic; Rui Lai; Marcus Elstner; Maja Gruden; Pablo Garcia-Fernandez; Qiang Cui
Journal:  Phys Chem Chem Phys       Date:  2020-12-07       Impact factor: 3.676

2.  Biomolecular QM/MM Simulations: What Are Some of the "Burning Issues"?

Authors:  Qiang Cui; Tanmoy Pal; Luke Xie
Journal:  J Phys Chem B       Date:  2021-01-06       Impact factor: 2.991

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.