Literature DB >> 25910204

A primer to single-particle cryo-electron microscopy.

Yifan Cheng1, Nikolaus Grigorieff2, Pawel A Penczek3, Thomas Walz4.   

Abstract

Cryo-electron microscopy (cryo-EM) of single-particle specimens is used to determine the structure of proteins and macromolecular complexes without the need for crystals. Recent advances in detector technology and software algorithms now allow images of unprecedented quality to be recorded and structures to be determined at near-atomic resolution. However, compared with X-ray crystallography, cryo-EM is a young technique with distinct challenges. This primer explains the different steps and considerations involved in structure determination by single-particle cryo-EM to provide an overview for scientists wishing to understand more about this technique and the interpretation of data obtained with it, as well as a starting guide for new practitioners.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25910204      PMCID: PMC4409659          DOI: 10.1016/j.cell.2015.03.050

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  71 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  FREALIGN: high-resolution refinement of single particle structures.

Authors:  Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2006-06-02       Impact factor: 2.867

Review 4.  Electronic detectors for electron microscopy.

Authors:  A R Faruqi; G McMullan
Journal:  Q Rev Biophys       Date:  2011-04-28       Impact factor: 5.318

5.  Cryomesh: a new substrate for cryo-electron microscopy.

Authors:  Craig Yoshioka; Bridget Carragher; Clinton S Potter
Journal:  Microsc Microanal       Date:  2010-02       Impact factor: 4.127

6.  Experimental verification of conformational variation of human fatty acid synthase as predicted by normal mode analysis.

Authors:  Jacob Brink; Steven J Ludtke; Yifei Kong; Salih J Wakil; Jianpeng Ma; Wah Chiu
Journal:  Structure       Date:  2004-02       Impact factor: 5.006

7.  Outcome of the first electron microscopy validation task force meeting.

Authors:  Richard Henderson; Andrej Sali; Matthew L Baker; Bridget Carragher; Batsal Devkota; Kenneth H Downing; Edward H Egelman; Zukang Feng; Joachim Frank; Nikolaus Grigorieff; Wen Jiang; Steven J Ludtke; Ohad Medalia; Pawel A Penczek; Peter B Rosenthal; Michael G Rossmann; Michael F Schmid; Gunnar F Schröder; Alasdair C Steven; David L Stokes; John D Westbrook; Willy Wriggers; Huanwang Yang; Jasmine Young; Helen M Berman; Wah Chiu; Gerard J Kleywegt; Catherine L Lawson
Journal:  Structure       Date:  2012-02-08       Impact factor: 5.006

Review 8.  Structural analysis of macromolecular assemblies by electron microscopy.

Authors:  E V Orlova; H R Saibil
Journal:  Chem Rev       Date:  2011-09-16       Impact factor: 60.622

9.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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  168 in total

1.  Single-particle electron microscopy in the study of membrane protein structure.

Authors:  Rita De Zorzi; Wei Mi; Maofu Liao; Thomas Walz
Journal:  Microscopy (Oxf)       Date:  2015-10-15       Impact factor: 1.571

Review 2.  Single-particle cryo-EM data acquisition by using direct electron detection camera.

Authors:  Shenping Wu; Jean-Paul Armache; Yifan Cheng
Journal:  Microscopy (Oxf)       Date:  2015-11-06       Impact factor: 1.571

Review 3.  Generalized single-particle cryo-EM--a historical perspective.

Authors:  Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-11-12       Impact factor: 1.571

Review 4.  Principles of cryo-EM single-particle image processing.

Authors:  Fred J Sigworth
Journal:  Microscopy (Oxf)       Date:  2015-12-24       Impact factor: 1.571

Review 5.  Towards a Structural View of Drug Binding to hERG K+ Channels.

Authors:  Jamie I Vandenberg; Eduardo Perozo; Toby W Allen
Journal:  Trends Pharmacol Sci       Date:  2017-07-12       Impact factor: 14.819

Review 6.  Membrane protein structural biology in the era of single particle cryo-EM.

Authors:  Yifan Cheng
Journal:  Curr Opin Struct Biol       Date:  2018-09-13       Impact factor: 6.809

7.  Single-molecule FRET methods to study the dynamics of proteins at work.

Authors:  Hisham Mazal; Gilad Haran
Journal:  Curr Opin Biomed Eng       Date:  2019-08-23

8.  A Graph Partitioning Approach to Simultaneous Angular Reconstitution.

Authors:  Gabi Pragier; Ido Greenberg; Xiuyuan Cheng; Yoel Shkolnisky
Journal:  IEEE Trans Comput Imaging       Date:  2016-04-20

9.  Structure and transformation of bacteriophage A511 baseplate and tail upon infection of Listeria cells.

Authors:  Ricardo C Guerrero-Ferreira; Mario Hupfeld; Sergey Nazarov; Nicholas Mi Taylor; Mikhail M Shneider; Jagan M Obbineni; Martin J Loessner; Takashi Ishikawa; Jochen Klumpp; Petr G Leiman
Journal:  EMBO J       Date:  2019-01-02       Impact factor: 11.598

10.  Atomic Resolution Cryo-EM Structure of β-Galactosidase.

Authors:  Alberto Bartesaghi; Cecilia Aguerrebere; Veronica Falconieri; Soojay Banerjee; Lesley A Earl; Xing Zhu; Nikolaus Grigorieff; Jacqueline L S Milne; Guillermo Sapiro; Xiongwu Wu; Sriram Subramaniam
Journal:  Structure       Date:  2018-05-10       Impact factor: 5.006

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