Literature DB >> 26470917

Single-particle electron microscopy in the study of membrane protein structure.

Rita De Zorzi1, Wei Mi2, Maofu Liao2, Thomas Walz3.   

Abstract

Single-particle electron microscopy (EM) provides the great advantage that protein structure can be studied without the need to grow crystals. However, due to technical limitations, this approach played only a minor role in the study of membrane protein structure. This situation has recently changed dramatically with the introduction of direct electron detection device cameras, which allow images of unprecedented quality to be recorded, also making software algorithms, such as three-dimensional classification and structure refinement, much more powerful. The enhanced potential of single-particle EM was impressively demonstrated by delivering the first long-sought atomic model of a member of the biomedically important transient receptor potential channel family. Structures of several more membrane proteins followed in short order. This review recounts the history of single-particle EM in the study of membrane proteins, describes the technical advances that now allow this approach to generate atomic models of membrane proteins and provides a brief overview of some of the membrane protein structures that have been studied by single-particle EM to date.
© The Author 2015. Published by Oxford University Press on behalf of The Japanese Society of Microscopy. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Keywords:  cryo-electron microscopy; membrane proteins; single-particle electron microscopy; structure determination

Mesh:

Substances:

Year:  2015        PMID: 26470917      PMCID: PMC4749050          DOI: 10.1093/jmicro/dfv058

Source DB:  PubMed          Journal:  Microscopy (Oxf)        ISSN: 2050-5698            Impact factor:   1.571


  105 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter.

Authors:  JungMin Kim; Shenping Wu; Thomas M Tomasiak; Claudia Mergel; Michael B Winter; Sebastian B Stiller; Yaneth Robles-Colmanares; Robert M Stroud; Robert Tampé; Charles S Craik; Yifan Cheng
Journal:  Nature       Date:  2014-11-02       Impact factor: 49.962

3.  Molecular structure determination by electron microscopy of unstained crystalline specimens.

Authors:  P N Unwin; R Henderson
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

4.  Reconstruction of the P2X(2) receptor reveals a vase-shaped structure with lateral tunnels above the membrane.

Authors:  Kazuhiro Mio; Toshihiko Ogura; Tomomi Yamamoto; Yoko Hiroaki; Yoshinori Fujiyoshi; Yoshihiro Kubo; Chikara Sato
Journal:  Structure       Date:  2009-02-13       Impact factor: 5.006

5.  Glutamate receptor desensitization is mediated by changes in quaternary structure of the ligand binding domain.

Authors:  David M Schauder; Oleg Kuybeda; Jinjin Zhang; Katherine Klymko; Alberto Bartesaghi; Mario J Borgnia; Mark L Mayer; Sriram Subramaniam
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

6.  Three-dimensional rearrangements within inositol 1,4,5-trisphosphate receptor by calcium.

Authors:  Kozo Hamada; Akiko Terauchi; Katsuhiko Mikoshiba
Journal:  J Biol Chem       Date:  2003-10-30       Impact factor: 5.157

7.  Validation of cryo-EM structure of IP₃R1 channel.

Authors:  Stephen C Murray; John Flanagan; Olga B Popova; Wah Chiu; Steven J Ludtke; Irina I Serysheva
Journal:  Structure       Date:  2013-05-23       Impact factor: 5.006

Review 8.  Electron crystallography as a technique to study the structure on membrane proteins in a lipidic environment.

Authors:  Stefan Raunser; Thomas Walz
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

9.  Domain organization of the type 1 inositol 1,4,5-trisphosphate receptor as revealed by single-particle analysis.

Authors:  Paula C A da Fonseca; Stephen A Morris; Edmund P Nerou; Colin W Taylor; Edward P Morris
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

10.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

View more
  9 in total

Review 1.  Applications of NMR to membrane proteins.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

2.  High resolution solid-state NMR spectroscopy of the Yersinia pestis outer membrane protein Ail in lipid membranes.

Authors:  Yong Yao; Samit Kumar Dutta; Sang Ho Park; Ratan Rai; L Miya Fujimoto; Andrey A Bobkov; Stanley J Opella; Francesca M Marassi
Journal:  J Biomol NMR       Date:  2017-02-26       Impact factor: 2.835

Review 3.  Stabilization and structure determination of integral membrane proteins by termini restraining.

Authors:  Shixuan Liu; Shuang Li; Andrzej M Krezel; Weikai Li
Journal:  Nat Protoc       Date:  2022-01-17       Impact factor: 17.021

4.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

Review 5.  Hitchhiking on the heptahelical highway: structure and function of 7TM receptor complexes.

Authors:  John J G Tesmer
Journal:  Nat Rev Mol Cell Biol       Date:  2016-04-20       Impact factor: 94.444

6.  A Three-Dimensional Model of the Yeast Transmembrane Sensor Wsc1 Obtained by SMA-Based Detergent-Free Purification and Transmission Electron Microscopy.

Authors:  Natalia Voskoboynikova; Maria Karlova; Rainer Kurre; Armen Y Mulkidjanian; Konstantin V Shaitan; Olga S Sokolova; Heinz-Jürgen Steinhoff; Jürgen J Heinisch
Journal:  J Fungi (Basel)       Date:  2021-02-05

7.  Phase-plate cryo-EM structure of a class B GPCR-G-protein complex.

Authors:  Yi-Lynn Liang; Maryam Khoshouei; Mazdak Radjainia; Yan Zhang; Alisa Glukhova; Jeffrey Tarrasch; David M Thal; Sebastian G B Furness; George Christopoulos; Thomas Coudrat; Radostin Danev; Wolfgang Baumeister; Laurence J Miller; Arthur Christopoulos; Brian K Kobilka; Denise Wootten; Georgios Skiniotis; Patrick M Sexton
Journal:  Nature       Date:  2017-04-24       Impact factor: 49.962

8.  Synthetic antibodies against BRIL as universal fiducial marks for single-particle cryoEM structure determination of membrane proteins.

Authors:  Somnath Mukherjee; Satchal K Erramilli; Mark Ammirati; Frances J D Alvarez; Kimberly F Fennell; Michael D Purdy; Blazej M Skrobek; Katarzyna Radziwon; John Coukos; Yanyong Kang; Przemysław Dutka; Xiang Gao; Xiayang Qiu; Mark Yeager; H Eric Xu; Seungil Han; Anthony A Kossiakoff
Journal:  Nat Commun       Date:  2020-03-27       Impact factor: 14.919

9.  Lipid Dynamics in Diisobutylene-Maleic Acid (DIBMA) Lipid Particles in Presence of Sensory Rhodopsin II.

Authors:  Natalia Voskoboynikova; Philipp Orekhov; Marine Bozdaganyan; Felix Kodde; Malte Rademacher; Maurice Schowe; Annette Budke-Gieseking; Britta Brickwedde; Olympia-Ekaterini Psathaki; Armen Y Mulkidjanian; Katia Cosentino; Konstantin V Shaitan; Heinz-Jürgen Steinhoff
Journal:  Int J Mol Sci       Date:  2021-03-04       Impact factor: 5.923

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.