Literature DB >> 20082728

Cryomesh: a new substrate for cryo-electron microscopy.

Craig Yoshioka1, Bridget Carragher, Clinton S Potter.   

Abstract

Here we evaluate a new grid substrate developed by ProtoChips Inc. (Raleigh, NC) for cryo-transmission electron microscopy. The new grids are fabricated from doped silicon carbide using processes adapted from the semiconductor industry. A major motivating purpose in the development of these grids was to increase the low-temperature conductivity of the substrate, a characteristic that is thought to affect the appearance of beam-induced movement (BIM) in transmission electron microscope (TEM) images of biological specimens. BIM degrades the quality of data and is especially severe when frozen biological specimens are tilted in the microscope. Our results show that this new substrate does indeed have a significant impact on reducing the appearance and severity of beam-induced movement in TEM images of tilted cryo-preserved samples. Furthermore, while we have not been able to ascertain the exact causes underlying the BIM phenomenon, we have evidence that the rigidity and flatness of these grids may play a major role in its reduction. This improvement in the reliability of imaging at tilt has a significant impact on using data collection methods such as random conical tilt or orthogonal tilt reconstruction with cryo-preserved samples. Reduction in BIM also has the potential for improving the resolution of three-dimensional cryo-reconstructions in general.

Entities:  

Year:  2010        PMID: 20082728      PMCID: PMC2840046          DOI: 10.1017/S1431927609991310

Source DB:  PubMed          Journal:  Microsc Microanal        ISSN: 1431-9276            Impact factor:   4.127


  16 in total

1.  Parameters affecting specimen flatness of two-dimensional crystals for electron crystallography.

Authors:  J Vonck
Journal:  Ultramicroscopy       Date:  2000-11       Impact factor: 2.689

2.  Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique.

Authors:  Nobuhiko Gyobu; Kazutoshi Tani; Yoko Hiroaki; Akiko Kamegawa; Kaoru Mitsuoka; Yoshinori Fujiyoshi
Journal:  J Struct Biol       Date:  2004-06       Impact factor: 2.867

3.  The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles.

Authors:  Andres E Leschziner; Eva Nogales
Journal:  J Struct Biol       Date:  2005-12-21       Impact factor: 2.867

Review 4.  Electron tomography: a 3D view of the subcellular world.

Authors:  Kenneth H Downing; Haixin Sui; Manfred Auer
Journal:  Anal Chem       Date:  2007-11-01       Impact factor: 6.986

5.  Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation.

Authors:  Craig Yoshioka; James Pulokas; Denis Fellmann; Clinton S Potter; Ronald A Milligan; Bridget Carragher
Journal:  J Struct Biol       Date:  2007-04-20       Impact factor: 2.867

6.  Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films.

Authors:  Daniel Rhinow; Werner Kühlbrandt
Journal:  Ultramicroscopy       Date:  2007-11-21       Impact factor: 2.689

7.  A test-bed for optimizing high-resolution single particle reconstructions.

Authors:  Scott M Stagg; Gabriel C Lander; Joel Quispe; Neil R Voss; Anchi Cheng; Henry Bradlow; Steven Bradlow; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2008-05-06       Impact factor: 2.867

Review 8.  Retrospective: radiation damage and its associated "information limitations".

Authors:  Robert M Glaeser
Journal:  J Struct Biol       Date:  2008-06-08       Impact factor: 2.867

9.  Specimen charging on thin films with one conducting layer: discussion of physical principles.

Authors:  Robert M Glaeser; Kenneth H Downing
Journal:  Microsc Microanal       Date:  2004-12       Impact factor: 4.127

10.  A dose-rate effect in single-particle electron microscopy.

Authors:  James Z Chen; Carsten Sachse; Chen Xu; Thorsten Mielke; Christian M T Spahn; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2007-10-01       Impact factor: 2.867

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  22 in total

1.  Cryo-EM-On-a-Chip: Custom-Designed Substrates for the 3D Analysis of Macromolecules.

Authors:  Nick A Alden; A Cameron Varano; William J Dearnaley; Maria J Solares; William Y Luqiu; Yanping Liang; Zhi Sheng; Sarah M McDonald; John Damiano; Jennifer McConnell; Madeline J Dukes; Deborah F Kelly
Journal:  Small       Date:  2019-04-08       Impact factor: 13.281

Review 2.  Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.

Authors:  Robert M Glaeser; Richard J Hall
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

Review 3.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

Review 4.  Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy.

Authors:  Nikolaus Grigorieff; Stephen C Harrison
Journal:  Curr Opin Struct Biol       Date:  2011-02-18       Impact factor: 6.809

5.  Deformed grids for single-particle cryo-electron microscopy of specimens exhibiting a preferred orientation.

Authors:  Ying Liu; Xing Meng; Zheng Liu
Journal:  J Struct Biol       Date:  2013-03-26       Impact factor: 2.867

6.  Tunable substrates improve imaging of viruses and cancer proteins.

Authors:  Carly E Winton; Brian L Gilmore; Justin R Tanner; A Cameron Varano; Zhi Sheng; Deborah F Kelly
Journal:  Micros Today       Date:  2017-07-06

7.  Images of paraffin monolayer crystals with perfect contrast: minimization of beam-induced specimen motion.

Authors:  R M Glaeser; G McMullan; A R Faruqi; R Henderson
Journal:  Ultramicroscopy       Date:  2010-10-26       Impact factor: 2.689

8.  Beam-induced motion of vitrified specimen on holey carbon film.

Authors:  Axel F Brilot; James Z Chen; Anchi Cheng; Junhua Pan; Stephen C Harrison; Clinton S Potter; Bridget Carragher; Richard Henderson; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2012-02-16       Impact factor: 2.867

Review 9.  Structural analysis of macromolecular assemblies by electron microscopy.

Authors:  E V Orlova; H R Saibil
Journal:  Chem Rev       Date:  2011-09-16       Impact factor: 60.622

Review 10.  A primer to single-particle cryo-electron microscopy.

Authors:  Yifan Cheng; Nikolaus Grigorieff; Pawel A Penczek; Thomas Walz
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

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