Literature DB >> 30219656

Membrane protein structural biology in the era of single particle cryo-EM.

Yifan Cheng1.   

Abstract

In the past few years, significant technological breakthroughs in single particle cryo-electron microscopy enabled a 'resolution revolution' of this technique. It also changed structural biology in an unprecedented way. For many biological macromolecules, obtaining well-ordered crystals of suitable size is no longer a prerequisite for determining their atomic structures. One of the most impacted areas is the structural biology of integral membrane proteins. New structures are now determined at a rapid pace. Despite these advances, further technological developments are still required to overcome new technical challenges that face membrane protein structural biology. In this review, I attempt to discuss some of these challenges.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30219656      PMCID: PMC6296881          DOI: 10.1016/j.sbi.2018.08.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  73 in total

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Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

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Journal:  J Mol Biol       Date:  2004-02-06       Impact factor: 5.469

3.  Automated molecular microscopy: the new Leginon system.

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Journal:  J Struct Biol       Date:  2005-07       Impact factor: 2.867

4.  Future directions of electron crystallography.

Authors:  Yoshinori Fujiyoshi
Journal:  Methods Mol Biol       Date:  2013

5.  Biochemistry. The resolution revolution.

Authors:  Werner Kühlbrandt
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

6.  Fabs enable single particle cryoEM studies of small proteins.

Authors:  Shenping Wu; Agustin Avila-Sakar; JungMin Kim; David S Booth; Charles H Greenberg; Andrea Rossi; Maofu Liao; Xueming Li; Akram Alian; Sarah L Griner; Narinobu Juge; Yadong Yu; Claudia M Mergel; Javier Chaparro-Riggers; Pavel Strop; Robert Tampé; Robert H Edwards; Robert M Stroud; Charles S Craik; Yifan Cheng
Journal:  Structure       Date:  2012-04-03       Impact factor: 5.006

7.  Structure, mechanism, and regulation of the chloroplast ATP synthase.

Authors:  Alexander Hahn; Janet Vonck; Deryck J Mills; Thomas Meier; Werner Kühlbrandt
Journal:  Science       Date:  2018-05-11       Impact factor: 47.728

8.  The architecture of respiratory supercomplexes.

Authors:  James A Letts; Karol Fiedorczuk; Leonid A Sazanov
Journal:  Nature       Date:  2016-09-21       Impact factor: 49.962

9.  Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2.

Authors:  Dari Kimanius; Björn O Forsberg; Sjors Hw Scheres; Erik Lindahl
Journal:  Elife       Date:  2016-11-15       Impact factor: 8.140

10.  TRPV1 structures in distinct conformations reveal activation mechanisms.

Authors:  Erhu Cao; Maofu Liao; Yifan Cheng; David Julius
Journal:  Nature       Date:  2013-12-05       Impact factor: 49.962

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  35 in total

1.  Optogenetic Modulation of Ion Channels by Photoreceptive Proteins.

Authors:  Hisao Tsukamoto; Yuji Furutani
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 2.  Single-particle cryo-EM studies of transmembrane proteins in SMA copolymer nanodiscs.

Authors:  Chang Sun; Robert B Gennis
Journal:  Chem Phys Lipids       Date:  2019-03-30       Impact factor: 3.329

3.  Cryo-EM analysis of a membrane protein embedded in the liposome.

Authors:  Xia Yao; Xiao Fan; Nieng Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-17       Impact factor: 11.205

4.  Bicelles Rich in both Sphingolipids and Cholesterol and Their Use in Studies of Membrane Proteins.

Authors:  James M Hutchison; Kuo-Chih Shih; Holger A Scheidt; Sarah M Fantin; Kristine F Parson; George A Pantelopulos; Haley R Harrington; Kathleen F Mittendorf; Shuo Qian; Richard A Stein; Scott E Collier; Melissa G Chambers; John Katsaras; Markus W Voehler; Brandon T Ruotolo; Daniel Huster; Robert L McFeeters; John E Straub; Mu-Ping Nieh; Charles R Sanders
Journal:  J Am Chem Soc       Date:  2020-07-08       Impact factor: 15.419

5.  Conformationally Restricted Monosaccharide-Cored Glycoside Amphiphiles: The Effect of Detergent Headgroup Variation on Membrane Protein Stability.

Authors:  Aiman Sadaf; Manuel Ramos; Jonas S Mortensen; Yang Du; Hyoung Eun Bae; Chastine F Munk; Parameswaran Hariharan; Bernadette Byrne; Brian K Kobilka; Claus J Loland; Lan Guan; Pil Seok Chae
Journal:  ACS Chem Biol       Date:  2019-07-29       Impact factor: 5.100

Review 6.  Cation-π Interactions and their Functional Roles in Membrane Proteins.

Authors:  Daniel T Infield; Ali Rasouli; Grace D Galles; Christophe Chipot; Emad Tajkhorshid; Christopher A Ahern
Journal:  J Mol Biol       Date:  2021-05-04       Impact factor: 5.469

Review 7.  Advances in high-speed atomic force microscopy (HS-AFM) reveal dynamics of transmembrane channels and transporters.

Authors:  George R Heath; Simon Scheuring
Journal:  Curr Opin Struct Biol       Date:  2019-03-14       Impact factor: 6.809

Review 8.  Protein Design: From the Aspect of Water Solubility and Stability.

Authors:  Rui Qing; Shilei Hao; Eva Smorodina; David Jin; Arthur Zalevsky; Shuguang Zhang
Journal:  Chem Rev       Date:  2022-08-03       Impact factor: 72.087

9.  Free-Radical Membrane Protein Footprinting by Photolysis of Perfluoroisopropyl Iodide Partitioned to Detergent Micelle by Sonication.

Authors:  Ming Cheng; Chunyang Guo; Weikai Li; Michael L Gross
Journal:  Angew Chem Int Ed Engl       Date:  2021-03-10       Impact factor: 15.336

Review 10.  Microbial methionine transporters and biotechnological applications.

Authors:  Nurul Amira Mohammad Mohany; Alessandra Totti; Keith R Naylor; Harald Janovjak
Journal:  Appl Microbiol Biotechnol       Date:  2021-04-30       Impact factor: 4.813

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