Literature DB >> 26566976

Generalized single-particle cryo-EM--a historical perspective.

Joachim Frank1.   

Abstract

This is a brief account of the earlier history of single-particle cryo-EM of biological molecules lacking internal symmetry, which goes back to the mid-seventies. The emphasis of this review is on the mathematical concepts and computational approaches. It is written as the field experiences a turning point in the wake of the introduction of digital cameras capable of single electron counting, and near-atomic resolution can be reached even for smaller molecules.
© The Author 2015. Published by Oxford University Press on behalf of The Japanese Society of Microscopy. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Keywords:  3D reconstruction; image processing; molecular structure; ribosome

Mesh:

Year:  2015        PMID: 26566976      PMCID: PMC4749046          DOI: 10.1093/jmicro/dfv358

Source DB:  PubMed          Journal:  Microscopy (Oxf)        ISSN: 2050-5698            Impact factor:   1.571


  65 in total

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Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Cryo-EM of the native structure of the calcium release channel/ryanodine receptor from sarcoplasmic reticulum.

Authors:  M Radermacher; T Wagenknecht; R Grassucci; J Frank; M Inui; C Chadwick; S Fleischer
Journal:  Biophys J       Date:  1992-04       Impact factor: 4.033

3.  The Ribosome Comes Alive.

Authors:  Joachim Frank
Journal:  Isr J Chem       Date:  2010-06-18       Impact factor: 3.333

4.  Molecular structure determination by electron microscopy of unstained crystalline specimens.

Authors:  P N Unwin; R Henderson
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

5.  Xmipp: An Image Processing Package for Electron Microscopy

Authors: 
Journal:  J Struct Biol       Date:  1996-10       Impact factor: 2.867

6.  Motif detection in quantum noise-limited electron micrographs by cross-correlation.

Authors:  W O Saxton; J Frank
Journal:  Ultramicroscopy       Date:  1977-04       Impact factor: 2.689

Review 7.  Three-dimensional reconstruction of single particles from random and nonrandom tilt series.

Authors:  M Radermacher
Journal:  J Electron Microsc Tech       Date:  1988-08

8.  The correlation averaging of a regularly arranged bacterial cell envelope protein.

Authors:  W O Saxton; W Baumeister
Journal:  J Microsc       Date:  1982-08       Impact factor: 1.758

9.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

10.  Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine.

Authors:  Wilson Wong; Xiao-chen Bai; Alan Brown; Israel S Fernandez; Eric Hanssen; Melanie Condron; Yan Hong Tan; Jake Baum; Sjors H W Scheres
Journal:  Elife       Date:  2014-06-09       Impact factor: 8.140

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  9 in total

Review 1.  The translation elongation cycle-capturing multiple states by cryo-electron microscopy.

Authors:  Joachim Frank
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

Review 2.  While the revolution will not be crystallized, biochemistry reigns supreme.

Authors:  Yoshimasa Takizawa; Elad Binshtein; Amanda L Erwin; Tasia M Pyburn; Kathleen F Mittendorf; Melanie D Ohi
Journal:  Protein Sci       Date:  2016-10-06       Impact factor: 6.725

Review 3.  Dawning of a new era in TRP channel structural biology by cryo-electron microscopy.

Authors:  M Gregor Madej; Christine M Ziegler
Journal:  Pflugers Arch       Date:  2018-01-17       Impact factor: 3.657

Review 4.  Ryanodine Receptor Structure and Function in Health and Disease.

Authors:  Gaetano Santulli; Daniel Lewis; Amedee des Georges; Andrew R Marks; Joachim Frank
Journal:  Subcell Biochem       Date:  2018

5.  POLARIS: Path of Least Action Analysis on Energy Landscapes.

Authors:  Evan Seitz; Joachim Frank
Journal:  J Chem Inf Model       Date:  2020-02-20       Impact factor: 4.956

6.  Recovery of Conformational Continuum From Single-Particle Cryo-EM Images: Optimization of ManifoldEM Informed by Ground Truth.

Authors:  Evan Seitz; Francisco Acosta-Reyes; Suvrajit Maji; Peter Schwander; Joachim Frank
Journal:  IEEE Trans Comput Imaging       Date:  2022-05-12

Review 7.  Unravelling biological macromolecules with cryo-electron microscopy.

Authors:  Rafael Fernandez-Leiro; Sjors H W Scheres
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

8.  Cryo-EM is a powerful tool, but helical applications can have pitfalls.

Authors:  Edward H Egelman; Fengbin Wang
Journal:  Soft Matter       Date:  2021-03-17       Impact factor: 3.679

9.  A cryo-TSEM with temperature cycling capability allows deep sublimation of ice to uncover fine structures in thick cells.

Authors:  Jiro Usukura; Akihiro Narita; Tomoharu Matsumoto; Eiji Usukura; Takeshi Sunaoshi; Syunya Watanabe; Yusuke Tamba; Yasuhira Nagakubo; Takashi Mizuo; Junzo Azuma; Masako Osumi; Kazutaka Nimura; Ryuichiro Tamochi; Yoichi Ose
Journal:  Sci Rep       Date:  2021-11-01       Impact factor: 4.379

  9 in total

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