Literature DB >> 16828314

FREALIGN: high-resolution refinement of single particle structures.

Nikolaus Grigorieff1.   

Abstract

The refinement of three-dimensional reconstructions and correction for the contrast transfer function of the microscope are important steps in the determination of macromolecular structures by single particle electron microscopy. The algorithms implemented in the computer program FREALIGN are optimized to perform these tasks efficiently. A general overview and details on how to use FREALIGN are provided. The program is free and available for download on the author's web page.

Mesh：

Year:  2006        PMID： 16828314     DOI： 10.1016/j.jsb.2006.05.004

Source DB:  PubMed          Journal:  J Struct Biol        ISSN： 1047-8477            Impact factor:   2.867


  252 in total

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Authors:  Gabriel C Lander; Anne-Claire Baudoux; Farooq Azam; Clinton S Potter; Bridget Carragher; John E Johnson
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.

Authors:  Wilson C Y Lau; John L Rubinstein
Journal:  Nature       Date:  2011-12-18       Impact factor: 49.962

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Authors:  Yoh-hei Takahashi; Gerwin H Westfield; Austin N Oleskie; Raymond C Trievel; Ali Shilatifard; Georgios Skiniotis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-07       Impact factor: 11.205

4.  Arrangement of subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM.

Authors:  Lindsay A Baker; Ian N Watt; Michael J Runswick; John E Walker; John L Rubinstein
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

5.  Atomic model of an infectious rotavirus particle.

Authors:  Ethan C Settembre; James Z Chen; Philip R Dormitzer; Nikolaus Grigorieff; Stephen C Harrison
Journal:  EMBO J       Date:  2010-12-14       Impact factor: 11.598

6.  Structure of AAV-DJ, a retargeted gene therapy vector: cryo-electron microscopy at 4.5 Å resolution.

Authors:  Thomas F Lerch; Jason K O'Donnell; Nancy L Meyer; Qing Xie; Kenneth A Taylor; Scott M Stagg; Michael S Chapman
Journal:  Structure       Date:  2012-06-21       Impact factor: 5.006

Review 7.  Principles of cryo-EM single-particle image processing.

Authors:  Fred J Sigworth
Journal:  Microscopy (Oxf)       Date:  2015-12-24       Impact factor: 1.571

Review 8.  Single-Particle Refinement and Variability Analysis in EMAN2.1.

Authors:  S J Ludtke
Journal:  Methods Enzymol       Date:  2016-07-01       Impact factor: 1.600

9.  Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.

Authors:  Sonali Dhindwal; Bryant Avila; Shanshan Feng; Reza Khayat
Journal:  J Virol       Date:  2019-03-05       Impact factor: 5.103

10.  Cryo-EM Structure of the Open Human Ether-à-go-go-Related K+ Channel hERG.

Authors:  Weiwei Wang; Roderick MacKinnon
Journal:  Cell       Date:  2017-04-20       Impact factor: 41.582
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