| Literature DB >> 25844196 |
Augusto Rivera1, Luz Stella Nerio1, Michael Bolte2.
Abstract
The title compound, C21H26Cl2N2O2, was prepared in a solvent-free microwave-assisted synthesis, and crystallizes in the ortho-rhom-bic space group Pna21. The imidazolidine ring adopts an envelope conformation and its mean plane is almost perpendicular to the two pendant aromatic rings [dihedral angles = 84.61 (9) and 86.54 (9)°]. The mol-ecular structure shows the presence of two intra-molecular O-H⋯N hydrogen bonds between the phenolic hy-droxy groups and imidazolidine N atoms. The two 3-chloro-6-hy-droxy-2,4-di-methyl-benzyl groups are located in a cis orientation with respect to the imidazolidine fragment. As a result, the lone pairs of electrons on the N atoms are presumed to be disposed in a syn conformation. This is therefore the first example of an exception to the 'rabbit-ears' effect in such 2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol derivatives.Entities:
Keywords: crystal structure; di-Mannich base; hydrogen bonding; imidazolidine; syn conformation
Year: 2015 PMID: 25844196 PMCID: PMC4350744 DOI: 10.1107/S2056989015002212
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The title molecule, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O1H1N1 | 0.99(5) | 1.66(5) | 2.606(3) | 158(4) |
| O2H2N2 | 0.86(4) | 1.83(4) | 2.619(3) | 152(3) |
| C13H13O2i | 0.95 | 2.59 | 3.464(4) | 152 |
Symmetry code: (i) .
Figure 2A perspective view along the a axis of the crystal packing of the title compound,. The C—H⋯O hydrogen bonds are shown as dashed lines.
Experimental details
| Crystal data | |
| Chemical formula | C21H26Cl2N2O2 |
|
| 409.34 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 173 |
|
| 20.1594(11), 17.8088(12), 5.6120(3) |
|
| 2014.8(2) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.34 |
| Crystal size (mm) | 0.22 0.11 0.09 |
| Data collection | |
| Diffractometer | Stoe |
| Absorption correction | Multi-scan ( |
|
| 0.891, 0.946 |
| No. of measured, independent and observed [ | 17730, 3708, 3280 |
|
| 0.080 |
| (sin /)max (1) | 0.604 |
| Refinement | |
|
| 0.035, 0.082, 1.00 |
| No. of reflections | 3708 |
| No. of parameters | 256 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.16, 0.20 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.00(4) |
Computer programs: X-AREA and X-RED32 (Stoe Cie, 2001 ▸), SHELXS87 and XP in SHELXTL-Plus (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸).
| C21H26Cl2N2O2 | |
| Mo | |
| Orthorhombic, | Cell parameters from 16491 reflections |
| θ = 2.1–25.9° | |
| µ = 0.34 mm−1 | |
| Needle, colourless | |
| 0.22 × 0.11 × 0.09 mm | |
| Stoe IPDS II two-circle diffractometer | 3280 reflections with |
| Radiation source: Genix 3D IµS microfocus X-ray source | |
| ω scans | θmax = 25.4°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 17730 measured reflections | |
| 3708 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.16 e Å−3 | |
| 3708 reflections | Δρmin = −0.20 e Å−3 |
| 256 parameters | Absolute structure: Flack |
| 1 restraint | Absolute structure parameter: 0.00 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Cl1 | 0.71322 (3) | 0.87262 (4) | 0.49746 (17) | 0.04042 (19) | |
| Cl2 | 0.63887 (4) | 0.04441 (4) | 0.5199 (2) | 0.0535 (2) | |
| O1 | 0.55382 (11) | 0.60445 (11) | 0.6973 (4) | 0.0383 (5) | |
| H1 | 0.574 (2) | 0.565 (3) | 0.595 (9) | 0.074 (13)* | |
| O2 | 0.52557 (10) | 0.34212 (11) | 0.6988 (4) | 0.0368 (5) | |
| H2 | 0.5460 (19) | 0.3744 (19) | 0.611 (7) | 0.044 (10)* | |
| N1 | 0.62589 (11) | 0.52659 (13) | 0.4013 (5) | 0.0304 (5) | |
| N2 | 0.61125 (12) | 0.40126 (13) | 0.4025 (5) | 0.0308 (5) | |
| C1 | 0.60746 (16) | 0.46539 (14) | 0.2433 (5) | 0.0326 (6) | |
| H1A | 0.5620 | 0.4721 | 0.1797 | 0.039* | |
| H1B | 0.6390 | 0.4605 | 0.1090 | 0.039* | |
| C2 | 0.68434 (15) | 0.49812 (15) | 0.5313 (7) | 0.0394 (7) | |
| H2A | 0.6872 | 0.5204 | 0.6925 | 0.047* | |
| H2B | 0.7258 | 0.5092 | 0.4435 | 0.047* | |
| C3 | 0.67177 (14) | 0.41297 (15) | 0.5448 (6) | 0.0341 (7) | |
| H3A | 0.7096 | 0.3846 | 0.4768 | 0.041* | |
| H3B | 0.6649 | 0.3968 | 0.7118 | 0.041* | |
| C4 | 0.63685 (15) | 0.59859 (15) | 0.2782 (6) | 0.0337 (6) | |
| H4A | 0.6020 | 0.6056 | 0.1558 | 0.040* | |
| H4B | 0.6803 | 0.5971 | 0.1959 | 0.040* | |
| C5 | 0.60838 (15) | 0.32829 (16) | 0.2813 (6) | 0.0337 (6) | |
| H5A | 0.6508 | 0.3195 | 0.1969 | 0.040* | |
| H5B | 0.5725 | 0.3294 | 0.1608 | 0.040* | |
| C11 | 0.63568 (13) | 0.66441 (15) | 0.4475 (5) | 0.0290 (6) | |
| C12 | 0.59219 (13) | 0.66519 (15) | 0.6419 (6) | 0.0304 (6) | |
| C13 | 0.58553 (14) | 0.72820 (15) | 0.7842 (6) | 0.0332 (6) | |
| H13 | 0.5558 | 0.7269 | 0.9154 | 0.040* | |
| C14 | 0.62147 (14) | 0.79335 (15) | 0.7393 (6) | 0.0326 (7) | |
| C15 | 0.66605 (13) | 0.79115 (14) | 0.5501 (6) | 0.0308 (6) | |
| C16 | 0.67502 (13) | 0.72850 (15) | 0.4053 (5) | 0.0296 (6) | |
| C17 | 0.61244 (17) | 0.86156 (17) | 0.8953 (7) | 0.0429 (8) | |
| H17A | 0.5790 | 0.8509 | 1.0175 | 0.064* | |
| H17B | 0.5977 | 0.9040 | 0.7976 | 0.064* | |
| H17C | 0.6547 | 0.8741 | 0.9720 | 0.064* | |
| C18 | 0.72556 (15) | 0.72805 (16) | 0.2061 (6) | 0.0387 (7) | |
| H18A | 0.7530 | 0.7733 | 0.2163 | 0.058* | |
| H18B | 0.7026 | 0.7270 | 0.0522 | 0.058* | |
| H18C | 0.7538 | 0.6835 | 0.2208 | 0.058* | |
| C21 | 0.59596 (13) | 0.26437 (14) | 0.4523 (5) | 0.0299 (6) | |
| C22 | 0.55305 (14) | 0.27410 (15) | 0.6465 (6) | 0.0317 (6) | |
| C23 | 0.53458 (15) | 0.21404 (16) | 0.7892 (6) | 0.0351 (6) | |
| H23 | 0.5045 | 0.2221 | 0.9169 | 0.042* | |
| C24 | 0.55924 (16) | 0.14239 (16) | 0.7492 (6) | 0.0385 (7) | |
| C25 | 0.60474 (15) | 0.13394 (15) | 0.5636 (6) | 0.0359 (7) | |
| C26 | 0.62373 (14) | 0.19245 (16) | 0.4129 (6) | 0.0334 (7) | |
| C27 | 0.67213 (16) | 0.18022 (16) | 0.2127 (6) | 0.0405 (7) | |
| H27A | 0.6872 | 0.1279 | 0.2141 | 0.061* | |
| H27B | 0.7103 | 0.2137 | 0.2333 | 0.061* | |
| H27C | 0.6504 | 0.1911 | 0.0604 | 0.061* | |
| C28 | 0.5373 (2) | 0.07780 (19) | 0.9026 (7) | 0.0534 (9) | |
| H28A | 0.5161 | 0.0395 | 0.8029 | 0.080* | |
| H28B | 0.5056 | 0.0958 | 1.0220 | 0.080* | |
| H28C | 0.5759 | 0.0560 | 0.9829 | 0.080* |
| Cl1 | 0.0421 (4) | 0.0336 (3) | 0.0456 (4) | −0.0080 (3) | 0.0053 (4) | −0.0003 (4) |
| Cl2 | 0.0674 (5) | 0.0306 (3) | 0.0625 (6) | 0.0073 (3) | −0.0007 (6) | 0.0026 (4) |
| O1 | 0.0401 (11) | 0.0349 (10) | 0.0400 (14) | −0.0082 (9) | 0.0115 (10) | 0.0021 (9) |
| O2 | 0.0379 (11) | 0.0373 (11) | 0.0353 (13) | 0.0040 (9) | 0.0028 (10) | 0.0014 (10) |
| N1 | 0.0329 (12) | 0.0293 (11) | 0.0289 (13) | −0.0008 (9) | −0.0042 (11) | 0.0015 (10) |
| N2 | 0.0352 (13) | 0.0284 (11) | 0.0287 (13) | 0.0008 (9) | −0.0056 (11) | 0.0000 (10) |
| C1 | 0.0389 (15) | 0.0314 (14) | 0.0276 (17) | −0.0011 (11) | −0.0055 (13) | 0.0012 (12) |
| C2 | 0.0415 (15) | 0.0360 (14) | 0.041 (2) | −0.0018 (12) | −0.0137 (17) | 0.0032 (15) |
| C3 | 0.0362 (15) | 0.0345 (13) | 0.0316 (18) | 0.0020 (11) | −0.0093 (13) | −0.0026 (13) |
| C4 | 0.0397 (16) | 0.0294 (14) | 0.0319 (17) | −0.0007 (11) | 0.0015 (14) | 0.0043 (12) |
| C5 | 0.0385 (15) | 0.0328 (14) | 0.0297 (17) | −0.0006 (12) | −0.0014 (13) | −0.0034 (13) |
| C11 | 0.0294 (14) | 0.0299 (13) | 0.0278 (18) | 0.0023 (10) | −0.0001 (12) | 0.0028 (11) |
| C12 | 0.0277 (14) | 0.0317 (13) | 0.0316 (17) | 0.0003 (11) | 0.0017 (12) | 0.0036 (12) |
| C13 | 0.0314 (14) | 0.0368 (14) | 0.0314 (17) | 0.0021 (12) | 0.0052 (13) | 0.0011 (12) |
| C14 | 0.0320 (14) | 0.0318 (14) | 0.0342 (19) | 0.0028 (10) | −0.0001 (13) | −0.0008 (13) |
| C15 | 0.0286 (13) | 0.0298 (13) | 0.0341 (18) | −0.0021 (10) | −0.0026 (12) | 0.0020 (12) |
| C16 | 0.0268 (13) | 0.0325 (14) | 0.0294 (16) | 0.0033 (11) | 0.0004 (12) | 0.0048 (11) |
| C17 | 0.0484 (18) | 0.0375 (16) | 0.043 (2) | 0.0007 (13) | 0.0080 (16) | −0.0055 (14) |
| C18 | 0.0394 (16) | 0.0375 (15) | 0.0392 (19) | −0.0023 (12) | 0.0099 (15) | −0.0007 (13) |
| C21 | 0.0295 (13) | 0.0308 (13) | 0.0294 (18) | −0.0022 (11) | −0.0035 (12) | −0.0018 (11) |
| C22 | 0.0309 (14) | 0.0345 (14) | 0.0297 (17) | 0.0005 (11) | −0.0053 (12) | −0.0020 (12) |
| C23 | 0.0337 (15) | 0.0418 (16) | 0.0297 (16) | −0.0032 (12) | 0.0003 (13) | 0.0006 (13) |
| C24 | 0.0450 (17) | 0.0352 (15) | 0.0352 (19) | −0.0093 (12) | −0.0069 (15) | 0.0043 (13) |
| C25 | 0.0403 (15) | 0.0295 (13) | 0.038 (2) | −0.0003 (11) | −0.0085 (13) | −0.0005 (12) |
| C26 | 0.0309 (14) | 0.0346 (15) | 0.0347 (17) | −0.0020 (11) | −0.0047 (13) | −0.0045 (12) |
| C27 | 0.0421 (17) | 0.0390 (16) | 0.040 (2) | 0.0014 (13) | 0.0049 (15) | −0.0065 (14) |
| C28 | 0.065 (2) | 0.0424 (18) | 0.053 (2) | −0.0127 (16) | 0.0006 (19) | 0.0101 (16) |
| Cl1—C15 | 1.760 (3) | C13—C14 | 1.391 (4) |
| Cl2—C25 | 1.754 (3) | C13—H13 | 0.9500 |
| O1—C12 | 1.366 (3) | C14—C15 | 1.392 (4) |
| O1—H1 | 0.99 (5) | C14—C17 | 1.508 (4) |
| O2—C22 | 1.364 (3) | C15—C16 | 1.392 (4) |
| O2—H2 | 0.86 (4) | C16—C18 | 1.513 (4) |
| N1—C1 | 1.453 (4) | C17—H17A | 0.9800 |
| N1—C4 | 1.473 (4) | C17—H17B | 0.9800 |
| N1—C2 | 1.476 (4) | C17—H17C | 0.9800 |
| N2—C1 | 1.452 (3) | C18—H18A | 0.9800 |
| N2—C5 | 1.468 (4) | C18—H18B | 0.9800 |
| N2—C3 | 1.473 (4) | C18—H18C | 0.9800 |
| C1—H1A | 0.9900 | C21—C22 | 1.402 (4) |
| C1—H1B | 0.9900 | C21—C26 | 1.415 (4) |
| C2—C3 | 1.539 (4) | C22—C23 | 1.387 (4) |
| C2—H2A | 0.9900 | C23—C24 | 1.388 (4) |
| C2—H2B | 0.9900 | C23—H23 | 0.9500 |
| C3—H3A | 0.9900 | C24—C25 | 1.396 (5) |
| C3—H3B | 0.9900 | C24—C28 | 1.503 (4) |
| C4—C11 | 1.509 (4) | C25—C26 | 1.396 (4) |
| C4—H4A | 0.9900 | C26—C27 | 1.504 (5) |
| C4—H4B | 0.9900 | C27—H27A | 0.9800 |
| C5—C21 | 1.510 (4) | C27—H27B | 0.9800 |
| C5—H5A | 0.9900 | C27—H27C | 0.9800 |
| C5—H5B | 0.9900 | C28—H28A | 0.9800 |
| C11—C12 | 1.399 (4) | C28—H28B | 0.9800 |
| C11—C16 | 1.410 (4) | C28—H28C | 0.9800 |
| C12—C13 | 1.384 (4) | ||
| C12—O1—H1 | 101 (3) | C15—C14—C17 | 122.9 (3) |
| C22—O2—H2 | 106 (2) | C14—C15—C16 | 123.5 (2) |
| C1—N1—C4 | 113.9 (2) | C14—C15—Cl1 | 117.0 (2) |
| C1—N1—C2 | 104.4 (2) | C16—C15—Cl1 | 119.5 (2) |
| C4—N1—C2 | 114.3 (2) | C15—C16—C11 | 118.5 (3) |
| C1—N2—C5 | 114.2 (2) | C15—C16—C18 | 121.5 (3) |
| C1—N2—C3 | 105.4 (2) | C11—C16—C18 | 119.9 (3) |
| C5—N2—C3 | 114.2 (2) | C14—C17—H17A | 109.5 |
| N2—C1—N1 | 101.6 (2) | C14—C17—H17B | 109.5 |
| N2—C1—H1A | 111.5 | H17A—C17—H17B | 109.5 |
| N1—C1—H1A | 111.5 | C14—C17—H17C | 109.5 |
| N2—C1—H1B | 111.5 | H17A—C17—H17C | 109.5 |
| N1—C1—H1B | 111.5 | H17B—C17—H17C | 109.5 |
| H1A—C1—H1B | 109.3 | C16—C18—H18A | 109.5 |
| N1—C2—C3 | 103.4 (2) | C16—C18—H18B | 109.5 |
| N1—C2—H2A | 111.1 | H18A—C18—H18B | 109.5 |
| C3—C2—H2A | 111.1 | C16—C18—H18C | 109.5 |
| N1—C2—H2B | 111.1 | H18A—C18—H18C | 109.5 |
| C3—C2—H2B | 111.1 | H18B—C18—H18C | 109.5 |
| H2A—C2—H2B | 109.1 | C22—C21—C26 | 118.5 (3) |
| N2—C3—C2 | 104.4 (2) | C22—C21—C5 | 120.2 (2) |
| N2—C3—H3A | 110.9 | C26—C21—C5 | 121.2 (3) |
| C2—C3—H3A | 110.9 | O2—C22—C23 | 116.8 (3) |
| N2—C3—H3B | 110.9 | O2—C22—C21 | 121.9 (3) |
| C2—C3—H3B | 110.9 | C23—C22—C21 | 121.3 (3) |
| H3A—C3—H3B | 108.9 | C22—C23—C24 | 121.3 (3) |
| N1—C4—C11 | 112.2 (3) | C22—C23—H23 | 119.4 |
| N1—C4—H4A | 109.2 | C24—C23—H23 | 119.4 |
| C11—C4—H4A | 109.2 | C23—C24—C25 | 117.1 (3) |
| N1—C4—H4B | 109.2 | C23—C24—C28 | 120.4 (3) |
| C11—C4—H4B | 109.2 | C25—C24—C28 | 122.6 (3) |
| H4A—C4—H4B | 107.9 | C26—C25—C24 | 123.5 (3) |
| N2—C5—C21 | 112.3 (2) | C26—C25—Cl2 | 119.1 (2) |
| N2—C5—H5A | 109.1 | C24—C25—Cl2 | 117.4 (2) |
| C21—C5—H5A | 109.1 | C25—C26—C21 | 118.2 (3) |
| N2—C5—H5B | 109.1 | C25—C26—C27 | 121.5 (3) |
| C21—C5—H5B | 109.1 | C21—C26—C27 | 120.3 (3) |
| H5A—C5—H5B | 107.9 | C26—C27—H27A | 109.5 |
| C12—C11—C16 | 118.4 (3) | C26—C27—H27B | 109.5 |
| C12—C11—C4 | 120.6 (2) | H27A—C27—H27B | 109.5 |
| C16—C11—C4 | 120.9 (3) | C26—C27—H27C | 109.5 |
| O1—C12—C13 | 117.1 (3) | H27A—C27—H27C | 109.5 |
| O1—C12—C11 | 121.6 (3) | H27B—C27—H27C | 109.5 |
| C13—C12—C11 | 121.2 (3) | C24—C28—H28A | 109.5 |
| C12—C13—C14 | 121.4 (3) | C24—C28—H28B | 109.5 |
| C12—C13—H13 | 119.3 | H28A—C28—H28B | 109.5 |
| C14—C13—H13 | 119.3 | C24—C28—H28C | 109.5 |
| C13—C14—C15 | 116.8 (3) | H28A—C28—H28C | 109.5 |
| C13—C14—C17 | 120.3 (3) | H28B—C28—H28C | 109.5 |
| C5—N2—C1—N1 | −168.1 (2) | C14—C15—C16—C18 | −178.2 (3) |
| C3—N2—C1—N1 | −42.0 (3) | Cl1—C15—C16—C18 | 1.3 (4) |
| C4—N1—C1—N2 | 170.7 (2) | C12—C11—C16—C15 | −3.7 (4) |
| C2—N1—C1—N2 | 45.4 (3) | C4—C11—C16—C15 | 172.2 (3) |
| C1—N1—C2—C3 | −31.0 (3) | C12—C11—C16—C18 | 176.3 (3) |
| C4—N1—C2—C3 | −156.0 (2) | C4—C11—C16—C18 | −7.8 (4) |
| C1—N2—C3—C2 | 22.5 (3) | N2—C5—C21—C22 | 37.3 (4) |
| C5—N2—C3—C2 | 148.6 (3) | N2—C5—C21—C26 | −146.7 (3) |
| N1—C2—C3—N2 | 5.2 (3) | C26—C21—C22—O2 | 178.5 (3) |
| C1—N1—C4—C11 | 163.0 (2) | C5—C21—C22—O2 | −5.4 (4) |
| C2—N1—C4—C11 | −77.2 (3) | C26—C21—C22—C23 | −4.0 (4) |
| C1—N2—C5—C21 | −166.3 (2) | C5—C21—C22—C23 | 172.1 (3) |
| C3—N2—C5—C21 | 72.3 (3) | O2—C22—C23—C24 | 179.3 (3) |
| N1—C4—C11—C12 | −36.2 (4) | C21—C22—C23—C24 | 1.7 (5) |
| N1—C4—C11—C16 | 148.0 (2) | C22—C23—C24—C25 | 1.7 (4) |
| C16—C11—C12—O1 | −178.3 (3) | C22—C23—C24—C28 | −178.6 (3) |
| C4—C11—C12—O1 | 5.8 (4) | C23—C24—C25—C26 | −3.0 (5) |
| C16—C11—C12—C13 | 2.7 (4) | C28—C24—C25—C26 | 177.3 (3) |
| C4—C11—C12—C13 | −173.2 (3) | C23—C24—C25—Cl2 | 177.3 (2) |
| O1—C12—C13—C14 | −178.7 (3) | C28—C24—C25—Cl2 | −2.4 (4) |
| C11—C12—C13—C14 | 0.3 (5) | C24—C25—C26—C21 | 0.8 (5) |
| C12—C13—C14—C15 | −2.2 (4) | Cl2—C25—C26—C21 | −179.5 (2) |
| C12—C13—C14—C17 | 179.1 (3) | C24—C25—C26—C27 | −179.0 (3) |
| C13—C14—C15—C16 | 1.2 (4) | Cl2—C25—C26—C27 | 0.7 (4) |
| C17—C14—C15—C16 | 179.8 (3) | C22—C21—C26—C25 | 2.7 (4) |
| C13—C14—C15—Cl1 | −178.4 (2) | C5—C21—C26—C25 | −173.4 (3) |
| C17—C14—C15—Cl1 | 0.3 (4) | C22—C21—C26—C27 | −177.5 (3) |
| C14—C15—C16—C11 | 1.8 (4) | C5—C21—C26—C27 | 6.4 (4) |
| Cl1—C15—C16—C11 | −178.7 (2) |
| H··· | ||||
| O1—H1···N1 | 0.99 (5) | 1.66 (5) | 2.606 (3) | 158 (4) |
| O2—H2···N2 | 0.86 (4) | 1.83 (4) | 2.619 (3) | 152 (3) |
| C13—H13···O2i | 0.95 | 2.59 | 3.464 (4) | 152 |