Literature DB >> 22259455

2,2'-[Imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Augusto Rivera, Luz Stella Nerio, Jaime Ríos-Motta, Karla Fejfarová, Michal Dušek.   

Abstract

In the title mol-ecule, C(17)H(20)N(2)O(2), the imidazolidine ring adopts a twist conformation. The mean plane through the five atoms of the imidazolidine ring makes dihedral angles of 70.18 (4) and 74.14 (4)° with the planes of the two aromatic rings. The dihedral angle between the benzene rings is 53.11 (5)°. Both phenol -OH groups form intra-molecular hydrogen bonds to the N atoms, with graph-set motif S(6). In the crystal, pairs of O-H⋯O hydrogen bonds link the mol-ecules into dimers with R(4) (4)(18) ring motifs. The crystal packing is further stabilized by C-H⋯O and weak C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 22259455      PMCID: PMC3254510          DOI: 10.1107/S1600536811053748

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Rivera et al. (2011 ▶). For the preparation of the title compound, see: Rivera et al. (1993 ▶). For ring conformations, see Cremer & Pople (1975 ▶). For hydrogen-bond graph-set nomenclature, see: Bernstein et al. (1995 ▶). For details of hydrogen bonding in Mannich bases, see: Koll et al. (2006 ▶); Filarowski et al. (1997 ▶).

Experimental

Crystal data

C17H20N2O2 M = 284.4 Monoclinic, a = 9.6541 (6) Å b = 9.5198 (11) Å c = 16.0007 (19) Å β = 97.321 (7)° V = 1458.6 (3) Å3 Z = 4 Cu Kα radiation μ = 0.68 mm−1 T = 120 K 0.56 × 0.46 × 0.35 mm

Data collection

Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.684, T max = 1 16045 measured reflections 2592 independent reflections 2323 reflections with I > 3σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.102 S = 1.84 2592 reflections 197 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811053748/bt5752sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053748/bt5752Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053748/bt5752Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20N2O2F(000) = 608
Mr = 284.4Dx = 1.295 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ynCell parameters from 9734 reflections
a = 9.6541 (6) Åθ = 2.8–66.9°
b = 9.5198 (11) ŵ = 0.68 mm1
c = 16.0007 (19) ÅT = 120 K
β = 97.321 (7)°Block, colourless
V = 1458.6 (3) Å30.56 × 0.46 × 0.35 mm
Z = 4
Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector2592 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2323 reflections with I > 3σ(I)
mirrorRint = 0.029
Detector resolution: 10.3784 pixels mm-1θmax = 67.1°, θmin = 5.1°
Rotation method data acquisition using ω scansh = −10→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→11
Tmin = 0.684, Tmax = 1l = −18→18
16045 measured reflections
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.032Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
wR(F2) = 0.102(Δ/σ)max = 0.008
S = 1.84Δρmax = 0.18 e Å3
2592 reflectionsΔρmin = −0.16 e Å3
197 parametersExtinction correction: B-C type 1 Lorentzian isotropic (Becker & Coppens, 1974)
2 restraintsExtinction coefficient: 2300 (400)
74 constraints
Experimental. CrysAlisPro (Agilent, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
O10.88118 (9)0.55808 (8)0.54258 (5)0.0258 (3)
O20.64185 (9)0.24108 (8)0.20085 (5)0.0266 (3)
N10.82182 (10)0.29372 (9)0.50324 (6)0.0216 (3)
N20.75183 (10)0.27736 (10)0.36014 (6)0.0230 (3)
C10.73543 (12)0.41864 (12)0.62221 (7)0.0220 (3)
C20.78452 (12)0.54925 (11)0.59766 (7)0.0223 (3)
C30.73697 (13)0.67284 (12)0.63044 (7)0.0263 (4)
C40.64267 (13)0.66779 (12)0.68865 (7)0.0286 (4)
C50.59312 (13)0.53957 (13)0.71379 (7)0.0293 (4)
C60.63913 (13)0.41633 (12)0.67971 (7)0.0260 (4)
C70.79468 (12)0.28403 (11)0.59129 (7)0.0234 (3)
C80.69700 (12)0.29649 (12)0.44015 (7)0.0234 (3)
C90.89999 (13)0.17320 (11)0.47679 (7)0.0258 (4)
C100.86888 (13)0.17560 (12)0.38032 (7)0.0261 (4)
C110.80113 (12)0.41147 (11)0.32684 (7)0.0234 (3)
C120.84082 (12)0.39145 (11)0.23931 (7)0.0220 (3)
C130.75755 (12)0.30847 (11)0.18009 (7)0.0226 (3)
C140.79084 (13)0.29425 (12)0.09837 (7)0.0260 (4)
C150.90434 (13)0.36558 (12)0.07451 (7)0.0286 (4)
C160.98804 (13)0.44846 (12)0.13217 (8)0.0282 (4)
C170.95637 (12)0.45896 (11)0.21422 (7)0.0241 (3)
H30.7696090.7618890.6126640.0316*
H40.6113030.7533940.7117890.0343*
H50.5278280.5361040.7542480.0352*
H60.6035970.3277870.6962680.0311*
H7a0.8797170.2609090.6264760.0281*
H7b0.7310880.2081420.5970160.0281*
H8a0.6374420.2188520.4495630.0281*
H8b0.6529610.3868220.440870.0281*
H9a0.8636650.088240.4979220.031*
H9b0.998060.1878510.4932440.031*
H10a0.9496310.2085980.3568720.0313*
H10b0.839350.0839540.3603220.0313*
H11a0.8805770.4449910.3636290.0281*
H11b0.7285630.4807120.3252920.0281*
H140.7351920.2351230.0586950.0312*
H150.9255460.3578380.0176850.0343*
H161.0667590.497790.1154360.0338*
H171.0155260.5140120.2544560.0289*
H1o0.8869 (16)0.4725 (11)0.5220 (9)0.0387*
H2o0.6533 (17)0.2415 (17)0.2562 (6)0.0399*
U11U22U33U12U13U23
O10.0292 (5)0.0224 (4)0.0271 (4)−0.0034 (3)0.0088 (3)−0.0011 (3)
O20.0273 (5)0.0291 (4)0.0231 (4)−0.0045 (3)0.0026 (3)−0.0035 (3)
N10.0230 (5)0.0218 (4)0.0200 (5)−0.0001 (4)0.0032 (4)−0.0009 (3)
N20.0263 (5)0.0222 (5)0.0209 (5)−0.0016 (4)0.0047 (4)−0.0017 (3)
C10.0224 (6)0.0249 (5)0.0175 (5)−0.0003 (4)−0.0020 (4)−0.0006 (4)
C20.0217 (6)0.0264 (6)0.0179 (5)−0.0008 (4)−0.0010 (4)0.0003 (4)
C30.0309 (7)0.0233 (6)0.0238 (6)0.0003 (4)−0.0003 (5)−0.0004 (4)
C40.0315 (7)0.0281 (6)0.0257 (6)0.0049 (5)0.0012 (5)−0.0054 (4)
C50.0294 (7)0.0362 (6)0.0230 (6)0.0020 (5)0.0059 (5)−0.0023 (5)
C60.0280 (7)0.0280 (6)0.0217 (6)−0.0028 (5)0.0030 (5)0.0010 (4)
C70.0279 (6)0.0222 (5)0.0203 (6)−0.0010 (4)0.0037 (4)0.0020 (4)
C80.0237 (6)0.0249 (5)0.0218 (6)−0.0022 (4)0.0036 (4)−0.0013 (4)
C90.0292 (7)0.0223 (5)0.0266 (6)0.0023 (4)0.0060 (5)−0.0001 (4)
C100.0309 (7)0.0220 (5)0.0258 (6)0.0012 (4)0.0057 (5)−0.0023 (4)
C110.0273 (6)0.0203 (5)0.0223 (6)−0.0023 (4)0.0019 (5)−0.0022 (4)
C120.0261 (6)0.0183 (5)0.0214 (6)0.0030 (4)0.0024 (4)0.0007 (4)
C130.0235 (6)0.0198 (5)0.0245 (6)0.0036 (4)0.0027 (4)0.0010 (4)
C140.0309 (7)0.0248 (5)0.0217 (6)0.0053 (5)0.0013 (5)−0.0023 (4)
C150.0349 (7)0.0294 (6)0.0224 (6)0.0083 (5)0.0078 (5)0.0037 (5)
C160.0292 (7)0.0250 (6)0.0313 (6)0.0036 (5)0.0079 (5)0.0057 (4)
C170.0264 (6)0.0193 (5)0.0264 (6)0.0017 (4)0.0025 (5)0.0018 (4)
O1—C21.3654 (15)C7—H7b0.96
O1—H1o0.883 (11)C8—H8a0.96
O2—C131.3653 (14)C8—H8b0.96
O2—H2o0.879 (9)C9—C101.5348 (16)
N1—C71.4684 (15)C9—H9a0.96
N1—C81.4703 (14)C9—H9b0.96
N1—C91.4650 (15)C10—H10a0.96
N2—C81.4578 (15)C10—H10b0.96
N2—C101.4922 (15)C11—C121.5104 (16)
N2—C111.4849 (15)C11—H11a0.96
C1—C21.4044 (16)C11—H11b0.96
C1—C61.3890 (17)C12—C131.4050 (15)
C1—C71.5120 (16)C12—C171.3902 (17)
C2—C31.3898 (16)C13—C141.3922 (17)
C3—C41.3837 (18)C14—C151.3836 (18)
C3—H30.96C14—H140.96
C4—C51.3890 (18)C15—C161.3916 (16)
C4—H40.96C15—H150.96
C5—C61.3902 (17)C16—C171.3890 (18)
C5—H50.96C16—H160.96
C6—H60.96C17—H170.96
C7—H7a0.96
C2—O1—H1o105.3 (10)H8a—C8—H8b114.38
C13—O2—H2o104.0 (10)N1—C9—C10103.70 (9)
C7—N1—C8115.40 (9)N1—C9—H9a109.4718
C7—N1—C9112.92 (8)N1—C9—H9b109.4709
C8—N1—C9102.89 (8)C10—C9—H9a109.4712
C8—N2—C10103.93 (8)C10—C9—H9b109.4714
C8—N2—C11112.12 (9)H9a—C9—H9b114.686
C10—N2—C11111.54 (9)N2—C10—C9105.84 (9)
C2—C1—C6118.51 (10)N2—C10—H10a109.4709
C2—C1—C7120.24 (10)N2—C10—H10b109.4713
C6—C1—C7121.09 (10)C9—C10—H10a109.4712
O1—C2—C1121.18 (10)C9—C10—H10b109.4714
O1—C2—C3118.51 (10)H10a—C10—H10b112.8697
C1—C2—C3120.30 (11)N2—C11—C12110.80 (9)
C2—C3—C4120.12 (11)N2—C11—H11a109.4718
C2—C3—H3119.9399N2—C11—H11b109.4711
C4—C3—H3119.9395C12—C11—H11a109.4708
C3—C4—C5120.39 (11)C12—C11—H11b109.4713
C3—C4—H4119.8038H11a—C11—H11b108.1129
C5—C4—H4119.8053C11—C12—C13120.35 (10)
C4—C5—C6119.27 (12)C11—C12—C17121.14 (9)
C4—C5—H5120.3644C13—C12—C17118.45 (10)
C6—C5—H5120.3649O2—C13—C12121.04 (10)
C1—C6—C5121.38 (11)O2—C13—C14118.47 (10)
C1—C6—H6119.3094C12—C13—C14120.49 (11)
C5—C6—H6119.3085C13—C14—C15119.81 (10)
N1—C7—C1112.45 (9)C13—C14—H14120.0949
N1—C7—H7a109.4718C15—C14—H14120.0956
N1—C7—H7b109.4717C14—C15—C16120.58 (11)
C1—C7—H7a109.4708C14—C15—H15119.7101
C1—C7—H7b109.4707C16—C15—H15119.7107
H7a—C7—H7b106.316C15—C16—C17119.23 (11)
N1—C8—N2104.07 (9)C15—C16—H16120.3866
N1—C8—H8a109.471C17—C16—H16120.3878
N1—C8—H8b109.4708C12—C17—C16121.40 (10)
N2—C8—H8a109.4722C12—C17—H17119.2994
N2—C8—H8b109.4714C16—C17—H17119.2985
?—?—?—??
Cg3 is the centroid of the C12–C17 benzene rings.
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.88 (1)1.83 (1)2.6394 (13)152.(2)
O2—H2o···N20.88 (1)1.84 (1)2.6557 (13)154.(2)
O1—H1o···O1i0.88 (1)2.60 (2)3.0232 (12)111.(1)
C11—H11a···O1i0.962.583.4961 (15)159.
C14—H14···O1ii0.962.503.4561 (15)172.
C6—H6···Cg3iii0.962.973.7868 (14)143
C10—H10b···Cg3ii0.962.833.6718 (13)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C12–C17 benzene rings.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N10.88 (1)1.83 (1)2.6394 (13)152 (2)
O2—H2o⋯N20.88 (1)1.84 (1)2.6557 (13)154 (2)
O1—H1o⋯O1i0.88 (1)2.60 (2)3.0232 (12)111 (1)
C11—H11a⋯O1i0.962.583.4961 (15)159
C14—H14⋯O1ii0.962.503.4561 (15)172
C6—H6⋯Cg3iii0.962.973.7868 (14)143
C10—H10bCg3ii0.962.833.6718 (13)148

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  4,4'-Dichloro-2,2'-[imidazolidine-1,3-diylbis(methylene)]diphenol.

Authors:  Augusto Rivera; John Sadat-Bernal; Jaime Ríos-Motta; Michaela Pojarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  1 in total
  8 in total

1.  Crystal structure of 1,1'-[imidazolidine-1,3-diylbis(methyl-ene)]bis-(naphthalen-2-ol).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-07

2.  6,6'-Dimethyl-2,2'-[imidazolidine-1,3-diyl-bis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-05

3.  Crystal structure of the di-Mannich base 4,4'-di-chloro-3,3',5,5'-tetra-methyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-25

4.  4,4'-Difluoro-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Monika Kučeráková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29

5.  4,4'-Dimethyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Monika Kučeraková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

6.  Single-step synthesis of a new series of meso di-Mannich bases from the cyclic aminal (2S,7R,11S,16R)-1,8,10,17-tetraazapentacyclo[8.8.1.1.(8,17)0.(2,7)0(11,16)]icosane and p-substituted phenols.

Authors:  Augusto Rivera; Diego Quiroga; Jaime Ríos-Motta; Václav Eigner; Michal Dušek
Journal:  Chem Cent J       Date:  2013-06-11       Impact factor: 4.215

7.  4,4'-Di-tert-butyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29

8.  2,2'-[(4-Methyl-2-phenyl-imidazolidine-1,3-di-yl)bis-(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Lorena Cárdenas; Jaime Ríos-Motta; Václav Eigner; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-03
  8 in total

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