Literature DB >> 22065817

4,4'-Dichloro-2,2'-[imidazolidine-1,3-diylbis(methylene)]diphenol.

Augusto Rivera, John Sadat-Bernal, Jaime Ríos-Motta, Michaela Pojarová, Michal Dušek.   

Abstract

The imidazolidine ring in the title compound, C(17)H(18)Cl(2)N(2)O(2), adopts a twist conformation. The observed conformation is stabilized by two intra-molecular O-H⋯N hydrogen bonds, with both N atoms acting as hydrogen-bond acceptors. The phenyl substituents are aligned at 70.0 (1) and 76.6 (1)° with respect to the best plane through the five atoms of the imidazolidine ring. Weak inter-molecular C-H⋯O inter-actions stabilize the crystal packing.

Entities:  

Year:  2011        PMID: 22065817      PMCID: PMC3201546          DOI: 10.1107/S1600536811035677

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Rivera et al. (1993 ▶). For synthetic applications of these di-Mannich bases, see: Rivera & Quevedo (2004 ▶); Rivera et al. (2004 ▶). For a closely related structure, see: Rivera et al. (2010 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For applications of tetra­hydro­salens and heterocalixarenes in medicine and metal-complex catalysis, see: Balsells & Walsh (2000 ▶); Weber et al. (1996 ▶).

Experimental

Crystal data

C17H18Cl2N2O2 M = 353.23 Monoclinic, a = 10.8640 (2) Å b = 9.6125 (2) Å c = 16.7242 (4) Å β = 106.608 (2)° V = 1673.65 (6) Å3 Z = 4 Cu Kα radiation μ = 3.58 mm−1 T = 120 K 0.42 × 0.37 × 0.25 mm

Data collection

Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.669, T max = 0.777 19547 measured reflections 2994 independent reflections 2772 reflections with I > 2σ(I)’ R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.101 S = 1.04 2994 reflections 208 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811035677/bt5631sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035677/bt5631Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811035677/bt5631Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18Cl2N2O2F(000) = 736
Mr = 353.23Dx = 1.402 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ynCell parameters from 9456 reflections
a = 10.8640 (2) Åθ = 4.2–67.1°
b = 9.6125 (2) ŵ = 3.58 mm1
c = 16.7242 (4) ÅT = 120 K
β = 106.608 (2)°Prism, colourless
V = 1673.65 (6) Å30.42 × 0.37 × 0.25 mm
Z = 4
Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer2994 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2772 reflections with I > 2σ(I)'
mirrorRint = 0.040
Detector resolution: 10.3784 pixels mm-1θmax = 67.2°, θmin = 4.4°
Rotation method data acquisition using ω scansh = −12→12
Absorption correction: analytical (CrysAlis PRO; Oxford Diffraction, 2010)k = −11→11
Tmin = 0.669, Tmax = 0.777l = −19→17
19547 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0604P)2 + 0.5161P] where P = (Fo2 + 2Fc2)/3
2994 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The H atoms were all located in a difference map, but those attached to carbon atoms were repositioned geometrically. The isotropic temperature parameters of hydrogen atoms were calculated as 1.2*Ueq of the parent atom. The distance between hydrogen and oxygen atom in hydroxyl group was fixed to the distance 0.87 Å.
xyzUiso*/Ueq
C10.21837 (14)0.21659 (16)0.42784 (10)0.0322 (3)
H1A0.17490.12800.42600.039*
H1B0.16080.29050.43370.039*
C20.36940 (16)0.33596 (16)0.38001 (10)0.0368 (4)
H2A0.34370.42800.35760.044*
H2B0.44090.30500.36070.044*
C30.40707 (16)0.33848 (17)0.47479 (10)0.0372 (4)
H3A0.49910.32750.49810.045*
H3B0.38090.42500.49490.045*
C40.29989 (15)0.10433 (15)0.32188 (10)0.0320 (3)
H4A0.23250.03540.31540.038*
H4B0.37660.06920.36210.038*
C50.32658 (14)0.12712 (15)0.23931 (9)0.0303 (3)
C60.42918 (14)0.06128 (15)0.22089 (9)0.0312 (3)
H60.48430.00510.26070.037*
C70.44951 (15)0.07915 (16)0.14360 (10)0.0326 (3)
C80.37107 (16)0.16444 (16)0.08356 (10)0.0354 (4)
H80.38640.17630.03200.043*
C90.26963 (16)0.23171 (16)0.10149 (10)0.0351 (4)
H90.21680.29010.06190.042*
C100.24590 (14)0.21281 (15)0.17805 (10)0.0316 (3)
C110.31970 (15)0.23442 (16)0.58004 (10)0.0330 (3)
H11A0.26050.31030.57930.040*
H11B0.40130.25780.61980.040*
C120.26818 (14)0.10368 (16)0.60816 (9)0.0299 (3)
C130.18268 (15)0.11162 (16)0.65594 (9)0.0328 (3)
H130.15160.19760.66670.039*
C140.14386 (17)−0.00807 (17)0.68735 (11)0.0358 (4)
C150.18658 (17)−0.13748 (17)0.67129 (10)0.0387 (4)
H150.1597−0.21730.69290.046*
C160.26995 (16)−0.14685 (17)0.62260 (10)0.0361 (4)
H160.2985−0.23360.61090.043*
C170.31142 (15)−0.02753 (16)0.59103 (10)0.0311 (3)
N10.25961 (12)0.23659 (13)0.35315 (8)0.0322 (3)
N20.33788 (12)0.21975 (13)0.49679 (8)0.0300 (3)
O10.14312 (10)0.27831 (11)0.19253 (7)0.0364 (3)
H1O10.15920.28020.25280.044*
O20.39647 (10)−0.04067 (12)0.54511 (7)0.0348 (3)
H1O20.40040.04940.52080.042*
Cl10.57874 (4)−0.00643 (4)0.12223 (3)0.03906 (15)
Cl20.04238 (5)0.00586 (5)0.75129 (3)0.04919 (16)
U11U22U33U12U13U23
C10.0287 (7)0.0310 (8)0.0365 (8)0.0010 (6)0.0086 (6)0.0027 (6)
C20.0402 (9)0.0281 (8)0.0418 (9)−0.0043 (6)0.0116 (7)0.0039 (6)
C30.0384 (8)0.0313 (8)0.0417 (9)−0.0080 (6)0.0111 (7)−0.0005 (6)
C40.0335 (8)0.0265 (7)0.0346 (8)0.0011 (6)0.0073 (6)0.0047 (6)
C50.0323 (7)0.0237 (7)0.0317 (8)−0.0034 (6)0.0039 (6)0.0025 (6)
C60.0316 (7)0.0245 (7)0.0332 (8)−0.0015 (6)0.0025 (6)0.0014 (6)
C70.0343 (8)0.0257 (7)0.0368 (8)−0.0026 (6)0.0083 (6)−0.0026 (6)
C80.0437 (9)0.0294 (8)0.0321 (8)−0.0033 (6)0.0090 (7)0.0008 (6)
C90.0404 (9)0.0273 (8)0.0328 (8)0.0009 (6)0.0025 (7)0.0046 (6)
C100.0312 (7)0.0240 (7)0.0360 (8)−0.0020 (6)0.0043 (6)0.0008 (6)
C110.0367 (8)0.0263 (7)0.0355 (8)−0.0008 (6)0.0094 (7)−0.0034 (6)
C120.0289 (7)0.0286 (8)0.0290 (7)0.0006 (6)0.0029 (6)−0.0009 (6)
C130.0337 (8)0.0322 (8)0.0301 (8)0.0025 (6)0.0052 (6)0.0002 (6)
C140.0339 (8)0.0402 (9)0.0307 (8)−0.0035 (6)0.0053 (7)0.0011 (6)
C150.0442 (9)0.0320 (8)0.0350 (8)−0.0078 (7)0.0036 (7)0.0040 (7)
C160.0415 (9)0.0266 (7)0.0351 (8)0.0008 (6)0.0026 (7)−0.0015 (6)
C170.0299 (7)0.0296 (7)0.0291 (8)0.0007 (6)0.0008 (6)−0.0018 (6)
N10.0327 (6)0.0264 (6)0.0368 (7)0.0001 (5)0.0089 (6)0.0035 (5)
N20.0286 (6)0.0279 (6)0.0330 (7)−0.0015 (5)0.0081 (5)−0.0007 (5)
O10.0341 (6)0.0341 (6)0.0385 (6)0.0057 (4)0.0063 (5)0.0060 (5)
O20.0353 (6)0.0299 (5)0.0395 (6)0.0045 (4)0.0109 (5)−0.0021 (5)
Cl10.0404 (3)0.0345 (2)0.0437 (3)0.00186 (14)0.01431 (19)−0.00169 (15)
Cl20.0477 (3)0.0585 (3)0.0470 (3)−0.00269 (18)0.0226 (2)0.00619 (18)
C1—N11.455 (2)C8—H80.9300
C1—N21.470 (2)C9—C101.388 (2)
C1—H1A0.9700C9—H90.9300
C1—H1B0.9700C10—O11.3625 (19)
C2—N11.494 (2)C11—N21.468 (2)
C2—C31.520 (2)C11—C121.505 (2)
C2—H2A0.9700C11—H11A0.9700
C2—H2B0.9700C11—H11B0.9700
C3—N21.470 (2)C12—C131.390 (2)
C3—H3A0.9700C12—C171.404 (2)
C3—H3B0.9700C13—C141.380 (2)
C4—N11.4873 (19)C13—H130.9300
C4—C51.506 (2)C14—C151.381 (2)
C4—H4A0.9700C14—Cl21.7466 (18)
C4—H4B0.9700C15—C161.383 (3)
C5—C61.391 (2)C15—H150.9300
C5—C101.408 (2)C16—C171.390 (2)
C6—C71.383 (2)C16—H160.9300
C6—H60.9300C17—O21.366 (2)
C7—C81.385 (2)O1—H1O10.9725
C7—Cl11.7500 (16)O2—H1O20.9623
C8—C91.383 (2)
N1—C1—N2104.54 (12)C8—C9—H9119.7
N1—C1—H1A110.8C10—C9—H9119.7
N2—C1—H1A110.8O1—C10—C9118.76 (14)
N1—C1—H1B110.8O1—C10—C5120.82 (14)
N2—C1—H1B110.8C9—C10—C5120.42 (14)
H1A—C1—H1B108.9N2—C11—C12112.28 (12)
N1—C2—C3106.13 (12)N2—C11—H11A109.1
N1—C2—H2A110.5C12—C11—H11A109.1
C3—C2—H2A110.5N2—C11—H11B109.1
N1—C2—H2B110.5C12—C11—H11B109.1
C3—C2—H2B110.5H11A—C11—H11B107.9
H2A—C2—H2B108.7C13—C12—C17118.97 (14)
N2—C3—C2104.13 (12)C13—C12—C11120.21 (14)
N2—C3—H3A110.9C17—C12—C11120.70 (14)
C2—C3—H3A110.9C14—C13—C12120.02 (15)
N2—C3—H3B110.9C14—C13—H13120.0
C2—C3—H3B110.9C12—C13—H13120.0
H3A—C3—H3B108.9C13—C14—C15121.39 (16)
N1—C4—C5110.56 (12)C13—C14—Cl2118.96 (13)
N1—C4—H4A109.5C15—C14—Cl2119.62 (13)
C5—C4—H4A109.5C14—C15—C16119.09 (15)
N1—C4—H4B109.5C14—C15—H15120.5
C5—C4—H4B109.5C16—C15—H15120.5
H4A—C4—H4B108.1C15—C16—C17120.51 (15)
C6—C5—C10118.47 (14)C15—C16—H16119.7
C6—C5—C4120.89 (13)C17—C16—H16119.7
C10—C5—C4120.61 (14)O2—C17—C16118.82 (14)
C7—C6—C5120.18 (14)O2—C17—C12121.17 (14)
C7—C6—H6119.9C16—C17—C12120.00 (15)
C5—C6—H6119.9C1—N1—C4112.49 (12)
C6—C7—C8121.45 (14)C1—N1—C2103.98 (12)
C6—C7—Cl1118.97 (12)C4—N1—C2111.25 (12)
C8—C7—Cl1119.57 (12)C11—N2—C1114.70 (12)
C9—C8—C7118.89 (15)C11—N2—C3112.33 (12)
C9—C8—H8120.6C1—N2—C3102.70 (12)
C7—C8—H8120.6C10—O1—H1O1106.2
C8—C9—C10120.56 (14)C17—O2—H1O2105.8
?—?—?—??
D—H···AD—HH···AD···AD—H···A
O1—H1O1···N10.971.772.6524 (17)149
O2—H1O2···N20.961.772.6515 (17)150
C4—H4B···O2i0.972.523.466 (2)163
C9—H9···O2ii0.932.473.395 (2)172
C11—H11B···O1iii0.972.583.482 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯N10.971.772.6524 (17)149
O2—H1O2⋯N20.961.772.6515 (17)150
C4—H4B⋯O2i0.972.523.466 (2)163
C9—H9⋯O2ii0.932.473.395 (2)172
C11—H11B⋯O1iii0.972.583.482 (2)154

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4,4'-Dichloro-2,2'-[(3aR,7aR/3aS,7aS)-2,3,3a,4,5,6,7,7a-octa-hydro-1H-1,3-benzimidazole-1,3-di-yl)bis-(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Diego Quiroga; Jaime Ríos-Motta; Michal Dušek; Karla Fejfarová
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30
  2 in total
  7 in total

1.  2,2'-[Imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

2.  Crystal structure of 1,1'-[imidazolidine-1,3-diylbis(methyl-ene)]bis-(naphthalen-2-ol).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-07

3.  6,6'-Dimethyl-2,2'-[imidazolidine-1,3-diyl-bis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-05

4.  Crystal structure of the di-Mannich base 4,4'-di-chloro-3,3',5,5'-tetra-methyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-25

5.  4,4'-Difluoro-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Monika Kučeráková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29

6.  4,4'-Dimethyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Monika Kučeraková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

7.  4,4'-Di-tert-butyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29
  7 in total

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