Literature DB >> 24764964

6,6'-Dimethyl-2,2'-[imidazolidine-1,3-diyl-bis(methyl-ene)]diphenol.

Augusto Rivera1, Luz Stella Nerio1, Michael Bolte2.   

Abstract

In the title compound, C19H24N2O2, a di-Mannich base derived from 2-methyl-phenol and 1,3,6,8-tetra-aza-tri-cyclo-[4.4.1.1(3,8)]dodecane, the imidazolidine ring adopts a twist conformation, with a twist about the ring N-C bond [C-N-C-C torsion angle = -44.34 (14)°]. The two 2-hy-droxy-3-methyl-benzyl groups are located in trans positions with respect to the imidazolidine fragment. The structure displays two intra-molecular O-H⋯N hydrogen bonds, which each form an S(6) ring motif. In the crystal, the mol-ecules are linked by weak C-H⋯O inter-actions with a bifurcated acceptor, forming a three-dimensional network.

Entities:  

Year:  2014        PMID: 24764964      PMCID: PMC3998388          DOI: 10.1107/S1600536814002128

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the original synthesis of the title compound, see: Rivera et al. (1993 ▶). For related structures, see: Rivera et al. (2011 ▶, 2012a ▶,b ▶,c ▶, 2013 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformations, see Cremer & Pople (1975 ▶). For bifurcated-acceptor hydrogen-bond conformations, see: Desiraju & Steiner (1999 ▶).

Experimental

Crystal data

C19H24N2O2 M = 312.40 Monoclinic, a = 12.6271 (11) Å b = 13.5780 (9) Å c = 10.1997 (9) Å β = 107.940 (7)° V = 1663.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.33 × 0.13 × 0.12 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001 ▶) T min = 0.974, T max = 0.990 16285 measured reflections 3207 independent reflections 2803 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.114 S = 1.07 3207 reflections 219 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.17 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814002128/fb2295sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002128/fb2295Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002128/fb2295Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H24N2O2Dx = 1.247 Mg m3
Mr = 312.40Melting point = 403–404 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 12.6271 (11) ÅCell parameters from 17856 reflections
b = 13.5780 (9) Åθ = 3.4–26.3°
c = 10.1997 (9) ŵ = 0.08 mm1
β = 107.940 (7)°T = 173 K
V = 1663.7 (2) Å3Needle, brown
Z = 40.33 × 0.13 × 0.12 mm
F(000) = 672
Stoe IPDS II two-circle diffractometer3207 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source2803 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.072
ω scansθmax = 25.9°, θmin = 3.4°
Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001)h = −15→15
Tmin = 0.974, Tmax = 0.990k = −16→14
16285 measured reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.114w = 1/[σ2(Fo2) + (0.053P)2 + 0.4801P] whereP = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3207 reflectionsΔρmax = 0.20 e Å3
219 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: difference Fourier mapExtinction coefficient: 0.017 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.52432 (9)0.10588 (7)0.59144 (11)0.0354 (3)
H10.460 (2)0.1024 (17)0.519 (2)0.067 (7)*
O2−0.00181 (8)0.17557 (8)0.53718 (10)0.0326 (3)
H20.047 (2)0.1533 (18)0.485 (2)0.070 (7)*
N10.32247 (9)0.16347 (9)0.42350 (11)0.0268 (3)
N20.16437 (9)0.10080 (9)0.46722 (12)0.0290 (3)
C10.25284 (12)0.17521 (11)0.51349 (15)0.0317 (3)
H1A0.22070.24230.50460.038*
H1B0.29690.16390.61090.038*
C20.24302 (12)0.13405 (12)0.29153 (14)0.0344 (3)
H2A0.28120.10470.22950.041*
H2B0.19700.19040.24470.041*
C30.17414 (13)0.05850 (13)0.33757 (15)0.0382 (4)
H3A0.10000.05050.26820.046*
H3B0.2122−0.00620.35420.046*
C40.38508 (12)0.25297 (11)0.41628 (15)0.0306 (3)
H4A0.33290.30890.38640.037*
H4B0.42470.24400.34710.037*
C50.16693 (12)0.02503 (11)0.57129 (15)0.0314 (3)
H5A0.24440.00130.61120.038*
H5B0.1208−0.03160.52550.038*
C110.46819 (11)0.27610 (10)0.55457 (15)0.0282 (3)
C120.53386 (11)0.20167 (10)0.63485 (15)0.0278 (3)
C130.61017 (11)0.22221 (11)0.76376 (15)0.0311 (3)
C140.62035 (12)0.31874 (12)0.80964 (17)0.0381 (4)
H140.67290.33410.89620.046*
C150.55590 (13)0.39346 (12)0.73245 (19)0.0424 (4)
H150.56360.45910.76620.051*
C160.48010 (12)0.37156 (11)0.60557 (17)0.0356 (3)
H160.43560.42270.55260.043*
C170.67528 (13)0.14002 (13)0.85113 (17)0.0411 (4)
H17A0.72040.16640.94020.062*
H17B0.72400.10970.80420.062*
H17C0.62370.09040.86590.062*
C210.12514 (11)0.06119 (10)0.68633 (14)0.0272 (3)
C220.04162 (11)0.13237 (10)0.66313 (13)0.0261 (3)
C23−0.00336 (12)0.16134 (11)0.76666 (15)0.0296 (3)
C240.03670 (13)0.11608 (11)0.89454 (15)0.0335 (3)
H240.00660.13390.96580.040*
C250.11964 (14)0.04555 (11)0.92013 (15)0.0368 (4)
H250.14610.01551.00840.044*
C260.16402 (12)0.01877 (11)0.81681 (15)0.0330 (3)
H260.2216−0.02910.83520.040*
C27−0.09425 (13)0.23731 (12)0.73391 (17)0.0391 (4)
H27A−0.11770.24910.81560.059*
H27B−0.15780.21360.65840.059*
H27C−0.06650.29880.70630.059*
U11U22U33U12U13U23
O10.0403 (6)0.0253 (5)0.0376 (6)0.0031 (4)0.0076 (5)−0.0018 (4)
O20.0313 (5)0.0376 (6)0.0286 (5)0.0036 (4)0.0090 (4)0.0072 (4)
N10.0281 (6)0.0290 (6)0.0252 (6)−0.0013 (5)0.0109 (5)−0.0026 (4)
N20.0299 (6)0.0310 (6)0.0269 (6)−0.0058 (5)0.0097 (5)−0.0056 (5)
C10.0318 (7)0.0343 (8)0.0332 (7)−0.0078 (6)0.0163 (6)−0.0096 (6)
C20.0354 (7)0.0427 (9)0.0262 (7)−0.0025 (6)0.0111 (6)−0.0060 (6)
C30.0414 (8)0.0431 (9)0.0312 (7)−0.0104 (7)0.0128 (6)−0.0131 (6)
C40.0300 (7)0.0311 (7)0.0329 (7)0.0001 (6)0.0130 (6)0.0059 (6)
C50.0308 (7)0.0277 (7)0.0350 (8)−0.0012 (6)0.0090 (6)−0.0020 (6)
C110.0241 (6)0.0285 (7)0.0354 (7)−0.0028 (5)0.0141 (6)0.0021 (6)
C120.0257 (6)0.0264 (7)0.0345 (7)−0.0014 (5)0.0142 (6)0.0003 (6)
C130.0252 (7)0.0340 (8)0.0361 (7)−0.0024 (6)0.0126 (6)0.0007 (6)
C140.0295 (7)0.0380 (9)0.0443 (9)−0.0083 (6)0.0076 (6)−0.0062 (7)
C150.0374 (8)0.0278 (8)0.0600 (10)−0.0073 (6)0.0119 (7)−0.0095 (7)
C160.0311 (7)0.0254 (7)0.0507 (9)−0.0015 (6)0.0130 (6)0.0026 (6)
C170.0380 (8)0.0424 (9)0.0385 (8)0.0014 (7)0.0055 (7)0.0039 (7)
C210.0269 (6)0.0237 (7)0.0297 (7)−0.0060 (5)0.0068 (5)−0.0015 (5)
C220.0260 (6)0.0247 (7)0.0261 (6)−0.0073 (5)0.0057 (5)0.0007 (5)
C230.0292 (7)0.0281 (7)0.0316 (7)−0.0076 (5)0.0095 (6)−0.0041 (5)
C240.0418 (8)0.0325 (8)0.0280 (7)−0.0102 (6)0.0137 (6)−0.0047 (6)
C250.0471 (9)0.0335 (8)0.0259 (7)−0.0064 (7)0.0053 (6)0.0045 (6)
C260.0333 (7)0.0275 (7)0.0333 (7)−0.0018 (6)0.0031 (6)0.0028 (6)
C270.0373 (8)0.0414 (9)0.0400 (8)0.0013 (7)0.0140 (7)−0.0039 (7)
O1—C121.3673 (17)C12—C131.398 (2)
O1—H10.91 (2)C13—C141.384 (2)
O2—C221.3643 (16)C13—C171.505 (2)
O2—H20.98 (2)C14—C151.384 (2)
N1—C11.4622 (17)C14—H140.9500
N1—C41.4639 (18)C15—C161.384 (2)
N1—C21.4650 (18)C15—H150.9500
N2—C51.4714 (19)C16—H160.9500
N2—C11.4719 (17)C17—H17A0.9800
N2—C31.4813 (18)C17—H17B0.9800
C1—H1A0.9900C17—H17C0.9800
C1—H1B0.9900C21—C261.393 (2)
C2—C31.510 (2)C21—C221.396 (2)
C2—H2A0.9900C22—C231.401 (2)
C2—H2B0.9900C23—C241.389 (2)
C3—H3A0.9900C23—C271.502 (2)
C3—H3B0.9900C24—C251.383 (2)
C4—C111.509 (2)C24—H240.9500
C4—H4A0.9900C25—C261.386 (2)
C4—H4B0.9900C25—H250.9500
C5—C211.509 (2)C26—H260.9500
C5—H5A0.9900C27—H27A0.9800
C5—H5B0.9900C27—H27B0.9800
C11—C161.388 (2)C27—H27C0.9800
C11—C121.400 (2)
C12—O1—H1106.2 (15)C13—C12—C11121.23 (13)
C22—O2—H2103.8 (14)C14—C13—C12118.17 (14)
C1—N1—C4112.31 (11)C14—C13—C17121.68 (14)
C1—N1—C2103.44 (11)C12—C13—C17120.11 (14)
C4—N1—C2114.07 (11)C13—C14—C15121.64 (15)
C5—N2—C1113.75 (11)C13—C14—H14119.2
C5—N2—C3112.55 (12)C15—C14—H14119.2
C1—N2—C3106.78 (11)C16—C15—C14119.36 (15)
N1—C1—N2105.53 (11)C16—C15—H15120.3
N1—C1—H1A110.6C14—C15—H15120.3
N2—C1—H1A110.6C15—C16—C11121.00 (14)
N1—C1—H1B110.6C15—C16—H16119.5
N2—C1—H1B110.6C11—C16—H16119.5
H1A—C1—H1B108.8C13—C17—H17A109.5
N1—C2—C3101.34 (11)C13—C17—H17B109.5
N1—C2—H2A111.5H17A—C17—H17B109.5
C3—C2—H2A111.5C13—C17—H17C109.5
N1—C2—H2B111.5H17A—C17—H17C109.5
C3—C2—H2B111.5H17B—C17—H17C109.5
H2A—C2—H2B109.3C26—C21—C22118.27 (13)
N2—C3—C2103.21 (12)C26—C21—C5120.23 (13)
N2—C3—H3A111.1C22—C21—C5121.36 (12)
C2—C3—H3A111.1O2—C22—C21121.39 (12)
N2—C3—H3B111.1O2—C22—C23116.77 (12)
C2—C3—H3B111.1C21—C22—C23121.83 (12)
H3A—C3—H3B109.1C24—C23—C22117.96 (14)
N1—C4—C11110.89 (11)C24—C23—C27123.03 (13)
N1—C4—H4A109.5C22—C23—C27118.99 (13)
C11—C4—H4A109.5C25—C24—C23121.28 (14)
N1—C4—H4B109.5C25—C24—H24119.4
C11—C4—H4B109.5C23—C24—H24119.4
H4A—C4—H4B108.1C24—C25—C26119.87 (13)
N2—C5—C21113.46 (12)C24—C25—H25120.1
N2—C5—H5A108.9C26—C25—H25120.1
C21—C5—H5A108.9C25—C26—C21120.79 (14)
N2—C5—H5B108.9C25—C26—H26119.6
C21—C5—H5B108.9C21—C26—H26119.6
H5A—C5—H5B107.7C23—C27—H27A109.5
C16—C11—C12118.60 (13)C23—C27—H27B109.5
C16—C11—C4120.58 (13)H27A—C27—H27B109.5
C12—C11—C4120.82 (13)C23—C27—H27C109.5
O1—C12—C13117.43 (13)H27A—C27—H27C109.5
O1—C12—C11121.33 (13)H27B—C27—H27C109.5
C4—N1—C1—N2156.96 (11)C12—C13—C14—C151.2 (2)
C2—N1—C1—N233.51 (15)C17—C13—C14—C15−176.34 (15)
C5—N2—C1—N1115.88 (13)C13—C14—C15—C16−0.7 (2)
C3—N2—C1—N1−8.89 (15)C14—C15—C16—C11−0.3 (2)
C1—N1—C2—C3−44.34 (14)C12—C11—C16—C150.6 (2)
C4—N1—C2—C3−166.63 (12)C4—C11—C16—C15179.84 (14)
C5—N2—C3—C2−143.72 (12)N2—C5—C21—C26−152.12 (12)
C1—N2—C3—C2−18.22 (16)N2—C5—C21—C2232.45 (18)
N1—C2—C3—N238.30 (15)C26—C21—C22—O2−178.73 (12)
C1—N1—C4—C1165.00 (15)C5—C21—C22—O2−3.2 (2)
C2—N1—C4—C11−177.72 (11)C26—C21—C22—C23−0.2 (2)
C1—N2—C5—C2174.79 (14)C5—C21—C22—C23175.35 (12)
C3—N2—C5—C21−163.60 (11)O2—C22—C23—C24177.86 (12)
N1—C4—C11—C16−135.44 (13)C21—C22—C23—C24−0.8 (2)
N1—C4—C11—C1243.76 (17)O2—C22—C23—C27−0.48 (19)
C16—C11—C12—O1178.67 (13)C21—C22—C23—C27−179.12 (13)
C4—C11—C12—O1−0.5 (2)C22—C23—C24—C250.9 (2)
C16—C11—C12—C13−0.1 (2)C27—C23—C24—C25179.21 (14)
C4—C11—C12—C13−179.28 (12)C23—C24—C25—C26−0.2 (2)
O1—C12—C13—C14−179.60 (13)C24—C25—C26—C21−0.8 (2)
C11—C12—C13—C14−0.8 (2)C22—C21—C26—C251.0 (2)
O1—C12—C13—C17−2.0 (2)C5—C21—C26—C25−174.60 (13)
C11—C12—C13—C17176.75 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.91 (2)1.90 (2)2.7115 (16)146 (2)
O2—H2···N20.98 (2)1.70 (2)2.6202 (16)155 (2)
C5—H5B···O2i0.992.433.4012 (18)167
C27—H27A···O2ii0.982.503.1789 (19)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.91 (2)1.90 (2)2.7115 (16)146 (2)
O2—H2⋯N20.98 (2)1.70 (2)2.6202 (16)155 (2)
C5—H5B⋯O2i 0.992.433.4012 (18)167
C27—H27A⋯O2ii 0.982.503.1789 (19)126

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2'-[Imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

3.  4,4'-Dichloro-2,2'-[imidazolidine-1,3-diylbis(methylene)]diphenol.

Authors:  Augusto Rivera; John Sadat-Bernal; Jaime Ríos-Motta; Michaela Pojarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

4.  4,4'-Difluoro-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Monika Kučeráková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29

5.  4,4'-Dimethyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Monika Kučeraková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

6.  4,4'-Di-tert-butyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29
  6 in total
  2 in total

1.  Crystal structure of 1,1'-[imidazolidine-1,3-diylbis(methyl-ene)]bis-(naphthalen-2-ol).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-07

2.  Crystal structure of the di-Mannich base 4,4'-di-chloro-3,3',5,5'-tetra-methyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-25
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.