Literature DB >> 23284485

4,4'-Dimethyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Augusto Rivera1, Luz Stella Nerio, Jaime Ríos-Motta, Monika Kučeraková, Michal Dušek.   

Abstract

The imidazolidine ring in the title compound, C(19)H(24)N(2)O(2), adopts a twist conformation and its mean plane (r.m.s. deviation = 0.19 Å) makes dihedral angles of 72.38 (9) and 71.64 (9)° with the two pendant aromatic rings. The dihedral angle between the phenyl rings is 55.94 (8)°. The mol-ecular structure shows the presence of two intra-molecular O-H⋯N hydrogen bonds between the phenolic hydroxyl groups and N atoms with graph-set motif S(6). In the crystal, C-H⋯O hydrogen bonds lead to the formation of chains along the b-axis direction.

Entities:  

Year:  2012        PMID: 23284485      PMCID: PMC3515265          DOI: 10.1107/S1600536812042808

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti-inflammatory and analgesic properties of imidazolidines, see: Sharma & Khan (2001 ▶). For related structures, see: Rivera et al. (2011 ▶, 2012 ▶). For the preparation of the title compound, see: Rivera et al. (1993 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For ring conformations, see Cremer & Pople (1975 ▶). For hydrogen-bond graph-set nomenclature, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C19H24N2O2 M = 312.4 Monoclinic, a = 11.5029 (4) Å b = 9.5001 (3) Å c = 16.1874 (6) Å β = 107.078 (3)° V = 1690.94 (10) Å3 Z = 4 Cu Kα radiation μ = 0.63 mm−1 T = 120 K 0.25 × 0.22 × 0.13 mm

Data collection

Agilent Xcalibur Atlas Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.573, T max = 1 12982 measured reflections 3007 independent reflections 2648 reflections with I > 3σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.104 S = 1.93 3007 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: Superflip (Palatinus & Chapuis 2007 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812042808/lr2083sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042808/lr2083Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042808/lr2083Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H24N2O2F(000) = 672
Mr = 312.4Dx = 1.227 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ynCell parameters from 8356 reflections
a = 11.5029 (4) Åθ = 4.0–66.9°
b = 9.5001 (3) ŵ = 0.63 mm1
c = 16.1874 (6) ÅT = 120 K
β = 107.078 (3)°Pyramidal shape, white
V = 1690.94 (10) Å30.25 × 0.22 × 0.13 mm
Z = 4
Agilent Xcalibur Atlas Gemini ultra diffractometer3007 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray source2648 reflections with I > 3σ(I)
Mirror monochromatorRint = 0.021
Detector resolution: 10.3784 pixels mm-1θmax = 67.1°, θmin = 4.2°
ω scansh = −13→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→11
Tmin = 0.573, Tmax = 1l = −19→18
12982 measured reflections
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.033Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
wR(F2) = 0.104(Δ/σ)max = 0.0004
S = 1.93Δρmax = 0.16 e Å3
3007 reflectionsΔρmin = −0.14 e Å3
215 parametersExtinction correction: B-C type 1 Gaussian isotropic (Becker & Coppens, 1974)
0 restraintsExtinction coefficient: 1300 (400)
90 constraints
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
O10.88856 (7)0.44965 (9)0.06241 (5)0.0310 (3)
O20.64693 (7)0.76997 (9)−0.30769 (6)0.0290 (3)
N10.76722 (9)0.73615 (10)−0.13993 (6)0.0266 (3)
N20.84361 (8)0.71755 (10)0.00889 (6)0.0261 (3)
C10.74585 (10)0.70626 (11)−0.32261 (7)0.0251 (3)
C20.82536 (10)0.62323 (11)−0.25869 (7)0.0243 (3)
C30.76676 (10)0.60644 (12)0.12013 (7)0.0247 (3)
C40.80273 (10)0.47037 (12)0.10465 (7)0.0267 (4)
C50.92398 (10)0.56062 (11)−0.27747 (7)0.0245 (3)
C60.86516 (11)0.66039 (12)−0.41913 (7)0.0290 (4)
C70.75212 (11)0.35433 (13)0.13319 (8)0.0313 (4)
C81.05237 (11)0.50485 (13)−0.37565 (8)0.0305 (4)
C90.72950 (10)0.71770 (12)−0.06231 (7)0.0273 (4)
C100.94551 (10)0.57626 (12)−0.35724 (7)0.0261 (4)
C110.80246 (10)0.60126 (12)−0.17246 (7)0.0256 (4)
C120.67858 (10)0.62103 (12)0.16280 (7)0.0262 (4)
C130.66608 (11)0.37235 (13)0.17686 (8)0.0315 (4)
C140.91127 (11)0.83498 (14)−0.01388 (8)0.0336 (4)
C150.87305 (12)0.83398 (13)−0.11242 (8)0.0335 (4)
C160.62725 (10)0.50583 (12)0.19224 (7)0.0280 (4)
C170.76650 (11)0.72510 (12)−0.40199 (8)0.0283 (4)
C180.82742 (10)0.73307 (12)0.09490 (7)0.0272 (4)
C190.53567 (12)0.52729 (15)0.24135 (9)0.0374 (4)
H1c50.9791860.504614−0.2338530.0294*
H1c60.8784060.67367−0.4744590.0348*
H1c70.7768180.2611830.1226260.0375*
H1c81.0721270.552979−0.4219210.0366*
H2c81.1211220.507333−0.3247840.0366*
H3c81.0318680.408791−0.3919770.0366*
H1c90.6898350.628276−0.0645250.0327*
H2c90.6804760.796361−0.0558930.0327*
H1c110.7384730.533616−0.1786170.0307*
H2c110.8748350.565476−0.1316790.0307*
H1c120.6521790.7139030.1722860.0315*
H1c130.6326260.2911540.1969010.0378*
H1c140.9969460.8167740.0079570.0403*
H2c140.8860320.9217090.0060060.0403*
H1c150.8480560.926862−0.1336820.0402*
H2c150.9385760.798444−0.1319270.0402*
H1c170.7125480.782964−0.4451980.034*
H1c180.779670.815530.096030.0327*
H2c180.9051340.7476430.1367570.0327*
H1c190.4804590.6011580.214620.0449*
H2c190.4910520.4416920.2406750.0449*
H3c190.5772220.5526890.3000020.0449*
H10.6668 (13)0.7721 (15)−0.2481 (11)0.0348*
H20.8974 (14)0.5333 (17)0.0373 (10)0.0372*
U11U22U33U12U13U23
O10.0325 (5)0.0315 (5)0.0289 (4)0.0074 (3)0.0088 (3)−0.0025 (3)
O20.0265 (4)0.0304 (5)0.0291 (5)0.0048 (3)0.0066 (3)0.0029 (3)
N10.0280 (5)0.0255 (5)0.0267 (5)0.0009 (4)0.0087 (4)0.0016 (4)
N20.0238 (5)0.0292 (5)0.0253 (5)−0.0011 (4)0.0073 (4)−0.0005 (4)
C10.0243 (6)0.0208 (5)0.0284 (6)−0.0011 (4)0.0050 (4)−0.0012 (4)
C20.0246 (5)0.0209 (5)0.0257 (6)−0.0031 (4)0.0048 (4)0.0003 (4)
C30.0251 (5)0.0261 (6)0.0203 (5)0.0005 (4)0.0026 (4)−0.0016 (4)
C40.0262 (6)0.0287 (6)0.0216 (5)0.0036 (4)0.0016 (4)−0.0029 (4)
C50.0243 (5)0.0202 (5)0.0265 (6)−0.0012 (4)0.0034 (4)0.0007 (4)
C60.0345 (6)0.0273 (6)0.0248 (6)−0.0022 (5)0.0081 (5)−0.0005 (4)
C70.0379 (7)0.0239 (6)0.0273 (6)0.0035 (5)0.0023 (5)−0.0017 (5)
C80.0311 (6)0.0295 (6)0.0311 (6)−0.0002 (5)0.0096 (5)−0.0028 (5)
C90.0244 (6)0.0298 (6)0.0276 (6)0.0021 (4)0.0075 (5)0.0014 (4)
C100.0268 (6)0.0224 (5)0.0281 (6)−0.0032 (4)0.0065 (4)−0.0020 (4)
C110.0246 (5)0.0239 (5)0.0277 (6)0.0007 (4)0.0070 (4)0.0029 (4)
C120.0265 (6)0.0245 (6)0.0260 (5)0.0025 (4)0.0050 (4)−0.0004 (4)
C130.0356 (6)0.0263 (6)0.0291 (6)−0.0046 (5)0.0041 (5)0.0024 (5)
C140.0305 (6)0.0366 (7)0.0344 (6)−0.0081 (5)0.0106 (5)−0.0007 (5)
C150.0405 (7)0.0263 (6)0.0341 (7)−0.0053 (5)0.0114 (5)0.0014 (5)
C160.0254 (6)0.0292 (6)0.0260 (6)−0.0012 (4)0.0025 (5)0.0023 (5)
C170.0315 (6)0.0243 (6)0.0261 (6)0.0006 (4)0.0036 (5)0.0032 (4)
C180.0286 (6)0.0266 (6)0.0268 (6)−0.0008 (4)0.0086 (5)−0.0036 (4)
C190.0332 (7)0.0377 (7)0.0435 (7)0.0000 (5)0.0147 (6)0.0070 (5)
O1—C41.3701 (16)C8—C101.5084 (18)
O1—H20.912 (17)C8—H1c80.96
O2—C11.3715 (15)C8—H2c80.96
O2—H10.923 (17)C8—H3c80.96
N1—C91.4552 (17)C9—H1c90.96
N1—C111.4863 (15)C9—H2c90.96
N1—C151.4919 (15)C11—H1c110.96
N2—C91.4707 (13)C11—H2c110.96
N2—C141.4678 (17)C12—C161.3924 (17)
N2—C181.4652 (17)C12—H1c120.96
C1—C21.4048 (14)C13—C161.3909 (17)
C1—C171.3852 (18)C13—H1c130.96
C2—C51.3913 (17)C14—C151.5250 (17)
C2—C111.5091 (18)C14—H1c140.96
C3—C41.4022 (16)C14—H2c140.96
C3—C121.3917 (18)C15—H1c150.96
C3—C181.5061 (17)C15—H2c150.96
C4—C71.3876 (18)C16—C191.508 (2)
C5—C101.3923 (18)C17—H1c170.96
C5—H1c50.96C18—H1c180.96
C6—C101.3974 (15)C18—H2c180.96
C6—C171.3884 (18)C19—H1c190.96
C6—H1c60.96C19—H2c190.96
C7—C131.385 (2)C19—H3c190.96
C7—H1c70.96
C4—O1—H2106.8 (11)C6—C10—C8121.43 (11)
C1—O2—H1103.3 (10)N1—C11—C2110.39 (9)
C9—N1—C11112.56 (9)N1—C11—H1c11109.47
C9—N1—C15103.97 (9)N1—C11—H2c11109.47
C11—N1—C15111.06 (9)C2—C11—H1c11109.47
C9—N2—C14102.68 (9)C2—C11—H2c11109.47
C9—N2—C18114.29 (9)H1c11—C11—H2c11108.54
C14—N2—C18112.76 (9)C3—C12—C16122.39 (11)
O2—C1—C2120.83 (11)C3—C12—H1c12118.8
O2—C1—C17118.92 (9)C16—C12—H1c12118.81
C2—C1—C17120.26 (11)C7—C13—C16121.26 (12)
C1—C2—C5118.38 (11)C7—C13—H1c13119.37
C1—C2—C11120.41 (11)C16—C13—H1c13119.37
C5—C2—C11121.20 (9)N2—C14—C15104.28 (9)
C4—C3—C12118.48 (11)N2—C14—H1c14109.47
C4—C3—C18120.22 (11)N2—C14—H2c14109.47
C12—C3—C18121.22 (10)C15—C14—H1c14109.47
O1—C4—C3121.02 (11)C15—C14—H2c14109.47
O1—C4—C7119.10 (11)H1c14—C14—H2c14114.2
C3—C4—C7119.88 (12)N1—C15—C14105.98 (11)
C2—C5—C10122.38 (9)N1—C15—H1c15109.47
C2—C5—H1c5118.81N1—C15—H2c15109.47
C10—C5—H1c5118.81C14—C15—H1c15109.47
C10—C6—C17121.16 (12)C14—C15—H2c15109.47
C10—C6—H1c6119.42H1c15—C15—H2c15112.75
C17—C6—H1c6119.42C12—C16—C13117.69 (12)
C4—C7—C13120.28 (11)C12—C16—C19120.40 (11)
C4—C7—H1c7119.86C13—C16—C19121.88 (12)
C13—C7—H1c7119.86C1—C17—C6120.07 (10)
C10—C8—H1c8109.47C1—C17—H1c17119.97
C10—C8—H2c8109.47C6—C17—H1c17119.97
C10—C8—H3c8109.47N2—C18—C3112.06 (9)
H1c8—C8—H2c8109.47N2—C18—H1c18109.47
H1c8—C8—H3c8109.47N2—C18—H2c18109.47
H2c8—C8—H3c8109.47C3—C18—H1c18109.47
N1—C9—N2104.65 (9)C3—C18—H2c18109.47
N1—C9—H1c9109.47H1c18—C18—H2c18106.76
N1—C9—H2c9109.47C16—C19—H1c19109.47
N2—C9—H1c9109.47C16—C19—H2c19109.47
N2—C9—H2c9109.47C16—C19—H3c19109.47
H1c9—C9—H2c9113.89H1c19—C19—H2c19109.47
C5—C10—C6117.74 (11)H1c19—C19—H3c19109.47
C5—C10—C8120.83 (9)H2c19—C19—H3c19109.47
D—H···AD—HH···AD···AD—H···A
O1—H2···N20.912 (17)1.869 (16)2.6893 (13)148.6 (16)
O2—H1···N10.923 (17)1.825 (15)2.6807 (12)153.0 (15)
C17—H1c17···O1i0.962.483.4286 (14)168.38
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H2⋯N20.912 (17)1.869 (16)2.6893 (13)148.6 (16)
O2—H1⋯N10.923 (17)1.825 (15)2.6807 (12)153.0 (15)
C17—H1c17⋯O1i 0.962.483.4286 (14)168.38

Symmetry code: (i) .

  3 in total

1.  Synthesis of novel tetrahydroimidazole derivatives and studies for their biological properties.

Authors:  V Sharma; M S Khan
Journal:  Eur J Med Chem       Date:  2001 Jul-Aug       Impact factor: 6.514

2.  2,2'-[Imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

3.  4,4'-Dichloro-2,2'-[imidazolidine-1,3-diylbis(methylene)]diphenol.

Authors:  Augusto Rivera; John Sadat-Bernal; Jaime Ríos-Motta; Michaela Pojarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  3 in total
  5 in total

1.  Crystal structure of 1,1'-[imidazolidine-1,3-diylbis(methyl-ene)]bis-(naphthalen-2-ol).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-07

2.  6,6'-Dimethyl-2,2'-[imidazolidine-1,3-diyl-bis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-05

3.  Crystal structure of the di-Mannich base 4,4'-di-chloro-3,3',5,5'-tetra-methyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-25

4.  Single-step synthesis of a new series of meso di-Mannich bases from the cyclic aminal (2S,7R,11S,16R)-1,8,10,17-tetraazapentacyclo[8.8.1.1.(8,17)0.(2,7)0(11,16)]icosane and p-substituted phenols.

Authors:  Augusto Rivera; Diego Quiroga; Jaime Ríos-Motta; Václav Eigner; Michal Dušek
Journal:  Chem Cent J       Date:  2013-06-11       Impact factor: 4.215

5.  4,4'-Di-tert-butyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29
  5 in total

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