Literature DB >> 23125807

4,4'-Difluoro-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Augusto Rivera1, Luz Stella Nerio, Jaime Ríos-Motta, Monika Kučeráková, Michal Dušek.   

Abstract

In the title compound, C(17)H(18)F(2)N(2)O(2), the imidazolidine ring system exists in a twist conformation. The mean plane through this ring system forms dihedral angles of 80.8 (8)° and 66.2 (13)°, with the benzene rings. The dihedral angle between the benzene rings is 52.0 (14)°. Two intra-molecular O-H⋯N hydrogen bonds each generate S(6) ring motifs. In the crystal, weak C-H⋯O hydrogen bonds form dimers, which are connected by further C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 23125807      PMCID: PMC3470394          DOI: 10.1107/S1600536812040329

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Rivera et al. (2011 ▶, 2012 ▶). For the preparation of the title compound, see: Rivera et al. (1993 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For ring conformations, see Cremer & Pople (1975 ▶). For hydrogen-bond graph-set nomenclature, see: Bernstein et al. (1995 ▶). For the involvement of organo halides in hydrogen bonds, see: Rathore et al. (2011 ▶); Steiner (2002 ▶); Chopra & Guru Row (2005 ▶). For the extinction correction used, see: Becker & Coppens (1974 ▶).

Experimental

Crystal data

C17H18F2N2O2 M = 320.3 Monoclinic, a = 9.5952 (2) Å b = 9.7018 (2) Å c = 16.2065 (3) Å β = 99.4807 (17)° V = 1488.07 (5) Å3 Z = 4 Cu Kα radiation μ = 0.94 mm−1 T = 120 K 0.35 × 0.22 × 0.21 mm

Data collection

Agilent Xcalibur (Atlas, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.123, T max = 1 35554 measured reflections 2669 independent reflections 2452 reflections with I > 3σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.108 S = 2.21 2669 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812040329/sj5264sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040329/sj5264Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812040329/sj5264Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18F2N2O2F(000) = 672
Mr = 320.3Dx = 1.429 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2yabcCell parameters from 21321 reflections
a = 9.5952 (2) Åθ = 4.6–67.0°
b = 9.7018 (2) ŵ = 0.94 mm1
c = 16.2065 (3) ÅT = 120 K
β = 99.4807 (17)°Polygon shape, white
V = 1488.07 (5) Å30.35 × 0.22 × 0.21 mm
Z = 4
Agilent Xcalibur (Atlas, Gemini ultra) diffractometer2669 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2452 reflections with I > 3σ(I)
Mirror monochromatorRint = 0.025
Detector resolution: 10.3784 pixels mm-1θmax = 67.1°, θmin = 5.0°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→11
Tmin = 0.123, Tmax = 1l = −19→19
35554 measured reflections
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.031Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
wR(F2) = 0.108(Δ/σ)max = 0.009
S = 2.21Δρmax = 0.19 e Å3
2669 reflectionsΔρmin = −0.17 e Å3
215 parametersExtinction correction: B-C type 1 Gaussian isotropic (Becker & Coppens, 1974)
0 restraintsExtinction coefficient: 900 (400)
66 constraints
Experimental. CrysAlisPro, Agilent, 2010Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
F10.58488 (7)0.98624 (8)0.11639 (4)0.0290 (2)
F20.02275 (8)0.97367 (8)0.76918 (5)0.0339 (3)
O10.37960 (8)0.95183 (9)0.53830 (5)0.0225 (3)
O20.14871 (8)1.28848 (8)0.20259 (5)0.0238 (3)
N10.25088 (9)1.23815 (10)0.36231 (6)0.0205 (3)
N20.32537 (9)1.21463 (10)0.50457 (5)0.0193 (3)
C10.30030 (12)1.22156 (12)0.59151 (7)0.0211 (3)
C20.25940 (11)1.21368 (11)0.18359 (7)0.0203 (3)
C30.45165 (11)1.05403 (12)0.21953 (7)0.0210 (3)
C40.39919 (12)1.14642 (12)0.07918 (7)0.0245 (3)
C50.33984 (11)1.12752 (12)0.24310 (6)0.0195 (3)
C60.28663 (11)0.96039 (12)0.59366 (7)0.0196 (3)
C70.24230 (11)1.08848 (12)0.62013 (6)0.0189 (3)
C80.15072 (11)1.09088 (12)0.67872 (7)0.0217 (3)
C90.40565 (12)1.33344 (13)0.48144 (7)0.0248 (3)
C100.14906 (12)0.84193 (13)0.68378 (7)0.0239 (3)
C110.29049 (12)1.22389 (12)0.10290 (7)0.0236 (3)
C120.23894 (11)0.83887 (12)0.62461 (7)0.0222 (3)
C130.36823 (12)1.33886 (12)0.38570 (7)0.0240 (4)
C140.19724 (11)1.21598 (12)0.44037 (6)0.0206 (3)
C150.47692 (11)1.06297 (12)0.13855 (7)0.0223 (3)
C160.10847 (12)0.96840 (13)0.70989 (7)0.0241 (4)
C170.30169 (11)1.10785 (12)0.32918 (7)0.0211 (3)
H1c10.2358011.2953430.5970240.0253*
H2c10.3869451.244080.6276480.0253*
H1c30.5107210.9974910.259540.0251*
H1c40.4195021.1508880.0231840.0294*
H1c80.117481.1770840.6971310.026*
H1c90.5049521.3161250.4973070.0297*
H2c90.3728581.4158830.5048260.0297*
H1c100.1163510.7581910.7057130.0286*
H1c110.2364481.2849330.0633170.0283*
H1c120.268250.7518860.6050190.0266*
H1c130.3358671.4297150.3686340.0288*
H2c130.4485561.3107470.3615060.0288*
H1c140.1517111.1276920.4388430.0247*
H2c140.1384271.2922310.4503220.0247*
H1c170.2297091.0385650.3267990.0253*
H2c170.3827371.0749350.366750.0253*
H20.1570 (14)1.2826 (15)0.2588 (10)0.0286*
H10.3808 (15)1.0424 (16)0.5183 (9)0.027*
U11U22U33U12U13U23
F10.0325 (4)0.0281 (4)0.0293 (4)0.0037 (3)0.0133 (3)−0.0034 (3)
F20.0408 (4)0.0331 (5)0.0338 (4)0.0006 (3)0.0235 (3)0.0031 (3)
O10.0263 (4)0.0211 (5)0.0221 (4)0.0031 (3)0.0096 (3)−0.0006 (3)
O20.0268 (4)0.0238 (5)0.0209 (4)0.0045 (3)0.0038 (3)0.0029 (3)
N10.0247 (5)0.0200 (5)0.0177 (4)0.0002 (4)0.0061 (4)0.0010 (4)
N20.0211 (4)0.0196 (5)0.0177 (5)−0.0005 (4)0.0045 (3)0.0005 (3)
C10.0263 (5)0.0200 (6)0.0173 (5)−0.0004 (4)0.0045 (4)−0.0016 (4)
C20.0231 (5)0.0168 (6)0.0207 (5)−0.0026 (4)0.0027 (4)−0.0006 (4)
C30.0240 (5)0.0170 (6)0.0214 (6)−0.0024 (4)0.0025 (4)−0.0008 (4)
C40.0313 (6)0.0247 (6)0.0183 (5)−0.0058 (5)0.0067 (4)−0.0015 (4)
C50.0234 (5)0.0172 (6)0.0175 (5)−0.0027 (4)0.0028 (4)−0.0008 (4)
C60.0191 (5)0.0235 (6)0.0155 (5)0.0010 (4)0.0011 (4)−0.0003 (4)
C70.0210 (5)0.0207 (6)0.0143 (5)0.0003 (4)0.0011 (4)−0.0007 (4)
C80.0250 (5)0.0221 (6)0.0183 (5)0.0029 (5)0.0046 (4)−0.0010 (4)
C90.0281 (6)0.0228 (6)0.0242 (6)−0.0056 (5)0.0063 (4)0.0009 (4)
C100.0266 (6)0.0227 (6)0.0222 (6)−0.0022 (5)0.0038 (4)0.0035 (4)
C110.0292 (6)0.0215 (6)0.0193 (5)−0.0027 (5)0.0015 (4)0.0028 (4)
C120.0261 (6)0.0199 (6)0.0201 (5)0.0020 (4)0.0022 (4)−0.0014 (4)
C130.0290 (6)0.0206 (6)0.0236 (6)−0.0023 (5)0.0081 (4)0.0017 (4)
C140.0212 (5)0.0221 (6)0.0189 (5)0.0012 (4)0.0044 (4)0.0013 (4)
C150.0248 (5)0.0190 (6)0.0244 (6)−0.0028 (4)0.0075 (4)−0.0042 (4)
C160.0245 (5)0.0295 (7)0.0199 (5)−0.0006 (5)0.0081 (4)0.0005 (5)
C170.0261 (5)0.0198 (6)0.0177 (5)0.0020 (4)0.0047 (4)0.0025 (4)
F1—C151.3706 (14)C4—H1c40.96
F2—C161.3648 (15)C5—C171.5116 (16)
O1—C61.3680 (14)C6—C71.4034 (16)
O1—H10.937 (16)C6—C121.3879 (16)
O2—C21.3628 (14)C7—C81.3962 (16)
O2—H20.903 (16)C8—C161.3780 (17)
N1—C131.4919 (14)C8—H1c80.96
N1—C141.4581 (15)C9—C131.5348 (15)
N1—C171.4867 (15)C9—H1c90.96
N2—C11.4694 (14)C9—H2c90.96
N2—C91.4689 (15)C10—C121.3916 (17)
N2—C141.4741 (13)C10—C161.3750 (17)
C1—C71.5089 (16)C10—H1c100.96
C1—H1c10.96C11—H1c110.96
C1—H2c10.96C12—H1c120.96
C2—C51.4070 (14)C13—H1c130.96
C2—C111.3918 (16)C13—H2c130.96
C3—C51.3928 (16)C14—H1c140.96
C3—C151.3761 (16)C14—H2c140.96
C3—H1c30.96C17—H1c170.96
C4—C111.3902 (17)C17—H2c170.96
C4—C151.3789 (15)
C6—O1—H1102.5 (10)N2—C9—H2c9109.47
C2—O2—H2104.6 (9)C13—C9—H1c9109.47
C13—N1—C14103.64 (8)C13—C9—H2c9109.47
C13—N1—C17111.71 (9)H1c9—C9—H2c9114.55
C14—N1—C17111.82 (9)C12—C10—C16118.04 (11)
C1—N2—C9112.60 (8)C12—C10—H1c10120.98
C1—N2—C14115.28 (9)C16—C10—H1c10120.98
C9—N2—C14102.96 (8)C2—C11—C4120.53 (10)
N2—C1—C7112.49 (9)C2—C11—H1c11119.73
N2—C1—H1c1109.47C4—C11—H1c11119.73
N2—C1—H2c1109.47C6—C12—C10120.64 (11)
C7—C1—H1c1109.47C6—C12—H1c12119.68
C7—C1—H2c1109.47C10—C12—H1c12119.68
H1c1—C1—H2c1106.28N1—C13—C9105.99 (9)
O2—C2—C5121.43 (10)N1—C13—H1c13109.47
O2—C2—C11118.03 (9)N1—C13—H2c13109.47
C5—C2—C11120.53 (10)C9—C13—H1c13109.47
C5—C3—C15119.60 (10)C9—C13—H2c13109.47
C5—C3—H1c3120.2H1c13—C13—H2c13112.74
C15—C3—H1c3120.2N1—C14—N2103.95 (8)
C11—C4—C15117.95 (11)N1—C14—H1c14109.47
C11—C4—H1c4121.03N1—C14—H2c14109.47
C15—C4—H1c4121.03N2—C14—H1c14109.47
C2—C5—C3118.46 (10)N2—C14—H2c14109.47
C2—C5—C17121.24 (10)H1c14—C14—H2c14114.48
C3—C5—C17120.20 (9)F1—C15—C3118.37 (9)
O1—C6—C7121.16 (10)F1—C15—C4118.77 (10)
O1—C6—C12118.35 (10)C3—C15—C4122.85 (11)
C7—C6—C12120.48 (10)F2—C16—C8118.27 (11)
C1—C7—C6121.21 (10)F2—C16—C10118.96 (11)
C1—C7—C8120.01 (10)C8—C16—C10122.77 (11)
C6—C7—C8118.62 (10)N1—C17—C5111.70 (9)
C7—C8—C16119.41 (11)N1—C17—H1c17109.47
C7—C8—H1c8120.29N1—C17—H2c17109.47
C16—C8—H1c8120.29C5—C17—H1c17109.47
N2—C9—C13103.87 (9)C5—C17—H2c17109.47
N2—C9—H1c9109.47H1c17—C17—H2c17107.14
D—H···AD—HH···AD···AD—H···A
O1—H1···N20.937 (16)1.756 (16)2.6413 (12)156.2 (14)
O2—H2···N10.903 (16)1.821 (15)2.6579 (12)153.2 (13)
C11—H1c11···O1i0.962.443.4001 (13)174.43
C17—H2c17···O1ii0.962.553.4837 (13)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N20.937 (16)1.756 (16)2.6413 (12)156.2 (14)
O2—H2⋯N10.903 (16)1.821 (15)2.6579 (12)153.2 (13)
C11—H1c11⋯O1i 0.962.443.4001 (13)174.43
C17—H2c17⋯O1ii 0.962.553.4837 (13)166

Symmetry codes: (i) ; (ii) .

  2 in total

1.  2,2'-[Imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

2.  4,4'-Dichloro-2,2'-[imidazolidine-1,3-diylbis(methylene)]diphenol.

Authors:  Augusto Rivera; John Sadat-Bernal; Jaime Ríos-Motta; Michaela Pojarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  2 in total
  5 in total

1.  Crystal structure of 1,1'-[imidazolidine-1,3-diylbis(methyl-ene)]bis-(naphthalen-2-ol).

Authors:  Augusto Rivera; Jicli José Rojas; Jaime Ríos-Motta; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-07

2.  6,6'-Dimethyl-2,2'-[imidazolidine-1,3-diyl-bis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-05

3.  Crystal structure of the di-Mannich base 4,4'-di-chloro-3,3',5,5'-tetra-methyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-25

4.  Single-step synthesis of a new series of meso di-Mannich bases from the cyclic aminal (2S,7R,11S,16R)-1,8,10,17-tetraazapentacyclo[8.8.1.1.(8,17)0.(2,7)0(11,16)]icosane and p-substituted phenols.

Authors:  Augusto Rivera; Diego Quiroga; Jaime Ríos-Motta; Václav Eigner; Michal Dušek
Journal:  Chem Cent J       Date:  2013-06-11       Impact factor: 4.215

5.  4,4'-Di-tert-butyl-2,2'-[imidazolidine-1,3-diylbis(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Luz Stella Nerio; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29
  5 in total

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