| Literature DB >> 25844181 |
Augusto Rivera1, Jicli José Rojas1, Jaime Ríos-Motta1, Michael Bolte2.
Abstract
The crystal structure of the title compound, C25H24N2O2, at 173 K has monoclinic (C2/c) symmetry. The mol-ecule is located on a crystallographic twofold rotation axis with only half a mol-ecule in the asymmetric unit. The imidazolidine ring adopts a twist conformation, with a twist about the ring C-C bond. The crystal structure shows the anti-clinal disposition of the two (2-hy-droxy-naphthalen-1-yl)methyl substituents of the imidazolidine ring. The structure displays two intra-molecular O-H⋯N hydrogen bonds, each forming an S(6) ring motif.Entities:
Keywords: (2-hydroxynaphthalen-1-yl)methyl; crystal structure; hydrogen bonding; imadazolidine
Year: 2015 PMID: 25844181 PMCID: PMC4350733 DOI: 10.1107/S2056989015002078
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. Hydrogen bonds are drawn as dashed lines. Atoms labelled with the suffix ‘A’ are generated using the symmetry operator (−x + 1, y, −z + ).
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O1H1N1 | 1.05(2) | 1.65(2) | 2.6143(19) | 151.0(19) |
| C2H2 | 0.99 | 2.64 | 3.257(2) | 121 |
Symmetry code: (i) .
Figure 2The crystal packing of the title compound, howing one of the zigzag chains that extend along the crystal c-axis direction. Hydrogen bonds are drawn as dashed lines.
Experimental details
| Crystal data | |
| Chemical formula | C25H24N2O2 |
|
| 384.46 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 173 |
|
| 34.883(5), 8.3956(9), 6.5830(8) |
| () | 95.650(11) |
|
| 1918.6(4) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.09 |
| Crystal size (mm) | 0.19 0.17 0.11 |
| Data collection | |
| Diffractometer | Stoe IPDS II two circle |
| Absorption correction | Multi-scan ( |
|
| 0.972, 0.989 |
| No. of measured, independent and observed [ | 8297, 1852, 1451 |
|
| 0.090 |
| (sin /)max (1) | 0.616 |
| Refinement | |
|
| 0.055, 0.159, 1.09 |
| No. of reflections | 1852 |
| No. of parameters | 136 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.24, 0.23 |
Computer programs: X-AREA (Stoe Cie, 2001 ▸), SHELXS97 and XP (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and publCIF (Westrip, 2010 ▸).
| C25H24N2O2 | |
| Monoclinic, | Mo |
| Cell parameters from 8026 reflections | |
| θ = 2.4–26.2° | |
| µ = 0.09 mm−1 | |
| β = 95.650 (11)° | |
| Block, colourless | |
| 0.19 × 0.17 × 0.11 mm |
| Stoe IPDS II two-circle diffractometer | 1451 reflections with |
| ω scans | |
| Absorption correction: multi-scan | θmax = 26.0°, θmin = 2.5° |
| 8297 measured reflections | |
| 1852 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1852 reflections | Δρmax = 0.24 e Å−3 |
| 136 parameters | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Occ. (<1) | |||||
| O1 | 0.45368 (4) | 0.77294 (16) | 0.70176 (19) | 0.0507 (4) | |
| H1 | 0.4677 (6) | 0.723 (3) | 0.583 (4) | 0.061 (6)* | |
| N1 | 0.47179 (4) | 0.69601 (18) | 0.3384 (2) | 0.0455 (4) | |
| C1 | 0.5000 | 0.5948 (4) | 0.2500 | 0.0627 (8) | |
| H1A | 0.5132 | 0.5258 | 0.3570 | 0.075* | 0.5 |
| H1B | 0.4868 | 0.5258 | 0.1430 | 0.075* | 0.5 |
| C2 | 0.47856 (5) | 0.8543 (2) | 0.2548 (2) | 0.0488 (5) | |
| H2A | 0.4707 | 0.9396 | 0.3459 | 0.059* | |
| H2B | 0.4646 | 0.8678 | 0.1175 | 0.059* | |
| C3 | 0.43203 (5) | 0.6374 (2) | 0.2997 (3) | 0.0491 (5) | |
| H3A | 0.4319 | 0.5212 | 0.3249 | 0.059* | |
| H3B | 0.4231 | 0.6549 | 0.1540 | 0.059* | |
| C11 | 0.40403 (5) | 0.7157 (2) | 0.4287 (2) | 0.0437 (4) | |
| C12 | 0.41619 (5) | 0.7796 (2) | 0.6188 (2) | 0.0446 (4) | |
| C13 | 0.38994 (6) | 0.8541 (2) | 0.7379 (3) | 0.0511 (5) | |
| H13 | 0.3990 | 0.8993 | 0.8660 | 0.061* | |
| C14 | 0.35197 (6) | 0.8623 (2) | 0.6724 (3) | 0.0541 (5) | |
| H14 | 0.3348 | 0.9149 | 0.7536 | 0.065* | |
| C15 | 0.33758 (5) | 0.7931 (2) | 0.4833 (3) | 0.0499 (5) | |
| C16 | 0.29795 (6) | 0.7964 (3) | 0.4150 (3) | 0.0611 (6) | |
| H16 | 0.2805 | 0.8489 | 0.4948 | 0.073* | |
| C17 | 0.28426 (6) | 0.7252 (3) | 0.2355 (3) | 0.0682 (6) | |
| H17 | 0.2575 | 0.7286 | 0.1910 | 0.082* | |
| C18 | 0.30975 (6) | 0.6476 (3) | 0.1178 (3) | 0.0662 (6) | |
| H18 | 0.3001 | 0.5965 | −0.0055 | 0.079* | |
| C19 | 0.34828 (6) | 0.6438 (3) | 0.1770 (3) | 0.0545 (5) | |
| H19 | 0.3650 | 0.5908 | 0.0938 | 0.065* | |
| C20 | 0.36387 (5) | 0.7181 (2) | 0.3618 (2) | 0.0455 (5) |
| O1 | 0.0588 (8) | 0.0562 (8) | 0.0367 (6) | −0.0007 (6) | 0.0024 (5) | −0.0039 (5) |
| N1 | 0.0551 (9) | 0.0469 (8) | 0.0350 (7) | 0.0057 (6) | 0.0072 (6) | −0.0001 (6) |
| C1 | 0.0688 (18) | 0.0559 (17) | 0.0670 (17) | 0.000 | 0.0256 (14) | 0.000 |
| C2 | 0.0617 (11) | 0.0505 (11) | 0.0342 (8) | 0.0027 (8) | 0.0047 (7) | 0.0023 (7) |
| C3 | 0.0615 (12) | 0.0496 (10) | 0.0364 (8) | −0.0001 (8) | 0.0061 (7) | −0.0058 (7) |
| C11 | 0.0590 (11) | 0.0412 (9) | 0.0318 (8) | 0.0009 (8) | 0.0086 (7) | 0.0016 (6) |
| C12 | 0.0574 (11) | 0.0438 (10) | 0.0331 (8) | −0.0026 (7) | 0.0067 (7) | 0.0024 (6) |
| C13 | 0.0676 (12) | 0.0525 (11) | 0.0342 (8) | −0.0042 (9) | 0.0098 (8) | −0.0063 (7) |
| C14 | 0.0667 (12) | 0.0548 (11) | 0.0436 (9) | 0.0030 (9) | 0.0192 (8) | −0.0039 (8) |
| C15 | 0.0570 (11) | 0.0539 (11) | 0.0399 (9) | −0.0012 (8) | 0.0107 (7) | 0.0054 (7) |
| C16 | 0.0597 (12) | 0.0746 (14) | 0.0508 (11) | 0.0032 (10) | 0.0141 (9) | 0.0079 (9) |
| C17 | 0.0549 (12) | 0.0951 (18) | 0.0539 (12) | −0.0018 (11) | 0.0020 (9) | 0.0091 (11) |
| C18 | 0.0678 (14) | 0.0890 (16) | 0.0409 (10) | −0.0065 (12) | 0.0010 (9) | 0.0002 (10) |
| C19 | 0.0614 (12) | 0.0646 (12) | 0.0376 (9) | −0.0022 (9) | 0.0055 (8) | −0.0020 (8) |
| C20 | 0.0602 (11) | 0.0455 (10) | 0.0316 (8) | −0.0021 (8) | 0.0082 (7) | 0.0036 (6) |
| O1—C12 | 1.368 (2) | C12—C13 | 1.409 (3) |
| O1—H1 | 1.05 (2) | C13—C14 | 1.354 (3) |
| N1—C1 | 1.464 (2) | C13—H13 | 0.9500 |
| N1—C2 | 1.467 (2) | C14—C15 | 1.420 (3) |
| N1—C3 | 1.470 (2) | C14—H14 | 0.9500 |
| C1—N1i | 1.464 (2) | C15—C16 | 1.411 (3) |
| C1—H1A | 0.9900 | C15—C20 | 1.422 (3) |
| C1—H1B | 0.9900 | C16—C17 | 1.368 (3) |
| C2—C2i | 1.503 (4) | C16—H16 | 0.9500 |
| C2—H2A | 0.9900 | C17—C18 | 1.397 (3) |
| C2—H2B | 0.9900 | C17—H17 | 0.9500 |
| C3—C11 | 1.507 (2) | C18—C19 | 1.362 (3) |
| C3—H3A | 0.9900 | C18—H18 | 0.9500 |
| C3—H3B | 0.9900 | C19—C20 | 1.427 (2) |
| C11—C12 | 1.389 (2) | C19—H19 | 0.9500 |
| C11—C20 | 1.427 (3) | ||
| C12—O1—H1 | 102.4 (12) | O1—C12—C13 | 116.36 (15) |
| C1—N1—C2 | 103.73 (15) | C11—C12—C13 | 121.01 (17) |
| C1—N1—C3 | 113.36 (14) | C14—C13—C12 | 120.94 (16) |
| C2—N1—C3 | 114.98 (14) | C14—C13—H13 | 119.5 |
| N1i—C1—N1 | 109.0 (2) | C12—C13—H13 | 119.5 |
| N1i—C1—H1A | 109.9 | C13—C14—C15 | 120.60 (17) |
| N1—C1—H1A | 109.9 | C13—C14—H14 | 119.7 |
| N1i—C1—H1B | 109.9 | C15—C14—H14 | 119.7 |
| N1—C1—H1B | 109.9 | C16—C15—C14 | 121.46 (18) |
| H1A—C1—H1B | 108.3 | C16—C15—C20 | 119.72 (18) |
| N1—C2—C2i | 102.34 (10) | C14—C15—C20 | 118.82 (18) |
| N1—C2—H2A | 111.3 | C17—C16—C15 | 120.9 (2) |
| C2i—C2—H2A | 111.3 | C17—C16—H16 | 119.5 |
| N1—C2—H2B | 111.3 | C15—C16—H16 | 119.5 |
| C2i—C2—H2B | 111.3 | C16—C17—C18 | 119.7 (2) |
| H2A—C2—H2B | 109.2 | C16—C17—H17 | 120.1 |
| N1—C3—C11 | 114.13 (14) | C18—C17—H17 | 120.1 |
| N1—C3—H3A | 108.7 | C19—C18—C17 | 121.1 (2) |
| C11—C3—H3A | 108.7 | C19—C18—H18 | 119.5 |
| N1—C3—H3B | 108.7 | C17—C18—H18 | 119.5 |
| C11—C3—H3B | 108.7 | C18—C19—C20 | 121.08 (19) |
| H3A—C3—H3B | 107.6 | C18—C19—H19 | 119.5 |
| C12—C11—C20 | 118.43 (16) | C20—C19—H19 | 119.5 |
| C12—C11—C3 | 121.27 (17) | C15—C20—C11 | 120.07 (16) |
| C20—C11—C3 | 120.22 (15) | C15—C20—C19 | 117.41 (18) |
| O1—C12—C11 | 122.62 (16) | C11—C20—C19 | 122.50 (17) |
| C2—N1—C1—N1i | 13.70 (8) | C13—C14—C15—C20 | −1.4 (3) |
| C3—N1—C1—N1i | 139.08 (14) | C14—C15—C16—C17 | −178.1 (2) |
| C1—N1—C2—C2i | −34.89 (17) | C20—C15—C16—C17 | 1.6 (3) |
| C3—N1—C2—C2i | −159.24 (14) | C15—C16—C17—C18 | 0.2 (4) |
| C1—N1—C3—C11 | 166.25 (14) | C16—C17—C18—C19 | −1.2 (4) |
| C2—N1—C3—C11 | −74.64 (18) | C17—C18—C19—C20 | 0.4 (3) |
| N1—C3—C11—C12 | −26.7 (2) | C16—C15—C20—C11 | 179.33 (16) |
| N1—C3—C11—C20 | 156.64 (15) | C14—C15—C20—C11 | −1.0 (3) |
| C20—C11—C12—O1 | 175.45 (15) | C16—C15—C20—C19 | −2.2 (3) |
| C3—C11—C12—O1 | −1.3 (3) | C14—C15—C20—C19 | 177.39 (17) |
| C20—C11—C12—C13 | −3.9 (3) | C12—C11—C20—C15 | 3.6 (3) |
| C3—C11—C12—C13 | 179.33 (16) | C3—C11—C20—C15 | −179.57 (16) |
| O1—C12—C13—C14 | −177.87 (16) | C12—C11—C20—C19 | −174.69 (17) |
| C11—C12—C13—C14 | 1.5 (3) | C3—C11—C20—C19 | 2.1 (3) |
| C12—C13—C14—C15 | 1.2 (3) | C18—C19—C20—C15 | 1.3 (3) |
| C13—C14—C15—C16 | 178.20 (18) | C18—C19—C20—C11 | 179.66 (18) |
| H··· | ||||
| O1—H1···N1 | 1.05 (2) | 1.65 (2) | 2.6143 (19) | 151.0 (19) |
| C2—H2 | 0.99 | 2.64 | 3.257 (2) | 121 |