Literature DB >> 25448013

Combining solvent isotope effects with substrate isotope effects in mechanistic studies of alcohol and amine oxidation by enzymes.

Paul F Fitzpatrick1.   

Abstract

Oxidation of alcohols and amines is catalyzed by multiple families of flavin- and pyridine nucleotide-dependent enzymes. Measurement of solvent isotope effects provides a unique mechanistic probe of the timing of the cleavage of the OH and NH bonds, necessary information for a complete description of the catalytic mechanism. The inherent ambiguities in interpretation of solvent isotope effects can be significantly decreased if isotope effects arising from isotopically labeled substrates are measured in combination with solvent isotope effects. The application of combined solvent and substrate (mainly deuterium) isotope effects to multiple enzymes is described here to illustrate the range of mechanistic insights that such an approach can provide. This article is part of a Special Issue entitled: Enzyme Transition States from Theory and Experiment.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Dehydrogenase; Enzyme kinetics; Flavoprotein; Kinetic isotope effect; Oxidase; Solvent isotope effect

Mesh:

Substances:

Year:  2014        PMID: 25448013      PMCID: PMC4416078          DOI: 10.1016/j.bbapap.2014.10.020

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  75 in total

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Review 2.  Flavin and 5-deazaflavin: a chemical evaluation of 'modified' flavoproteins with respect to the mechanisms of redox biocatalysis.

Authors:  P Hemmerich; V Massey
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3.  On the catalytic role of the conserved active site residue His466 of choline oxidase.

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Journal:  Biochemistry       Date:  2005-01-25       Impact factor: 3.162

Review 4.  Solvent isotope effects of enzyme systems.

Authors:  K B Schowen; R L Schowen
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

5.  Hydride transfer in liver alcohol dehydrogenase: quantum dynamics, kinetic isotope effects, and role of enzyme motion.

Authors:  S R Billeter; S P Webb; P K Agarwal; T Iordanov; S Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2001-11-14       Impact factor: 15.419

6.  Substitution of Tyr254 with Phe at the active site of flavocytochrome b2: consequences on catalysis of lactate dehydrogenation.

Authors:  J Dubois; S K Chapman; F S Mathews; G A Reid; F Lederer
Journal:  Biochemistry       Date:  1990-07-10       Impact factor: 3.162

7.  Crystal structure analysis of recombinant rat kidney long chain hydroxy acid oxidase.

Authors:  Louise M Cunane; John D Barton; Zhi-wei Chen; K H Diêp Lê; David Amar; Florence Lederer; F Scott Mathews
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

8.  Nitrogen kinetic isotope effects for the monoamine oxidase B-catalyzed oxidation of benzylamine and (1,1-(2)H2)benzylamine: nitrogen rehybridization and CH bond cleavage are not concerted.

Authors:  Susanna MacMillar; Dale E Edmondson; Olle Matsson
Journal:  J Am Chem Soc       Date:  2011-07-28       Impact factor: 15.419

9.  pH and kinetic isotope effects on the reductive half-reaction of D-amino acid oxidase.

Authors:  J M Denu; P F Fitzpatrick
Journal:  Biochemistry       Date:  1992-09-08       Impact factor: 3.162

10.  Kinetic isotope effects on the rate-limiting step of heme oxygenase catalysis indicate concerted proton transfer/heme hydroxylation.

Authors:  Roman Davydov; Toshitaka Matsui; Hiroshi Fujii; Masao Ikeda-Saito; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

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  15 in total

1.  Mechanism of Flavoprotein l-6-Hydroxynicotine Oxidase: pH and Solvent Isotope Effects and Identification of Key Active Site Residues.

Authors:  Paul F Fitzpatrick; Fatemeh Chadegani; Shengnan Zhang; Vi Dougherty
Journal:  Biochemistry       Date:  2017-01-26       Impact factor: 3.162

2.  Mechanism of the Flavoprotein d-6-Hydroxynicotine Oxidase: Substrate Specificity, pH and Solvent Isotope Effects, and Roles of Key Active-Site Residues.

Authors:  Paul F Fitzpatrick; Vi Dougherty; Bishnu Subedi; Jesus Quilantan; Cynthia S Hinck; Andreina I Lujan; Jose R Tormos
Journal:  Biochemistry       Date:  2019-05-10       Impact factor: 3.162

3.  13C kinetic isotope effects on the reaction of a flavin amine oxidase determined from whole molecule isotope effects.

Authors:  José R Tormos; Marina B Suarez; Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2016-11-01       Impact factor: 4.013

Review 4.  Nitroalkane oxidase: Structure and mechanism.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

5.  pH and deuterium isotope effects on the reaction of trimethylamine dehydrogenase with dimethylamine.

Authors:  Udayanga S Wanninayake; Bishnu Subedi; Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2019-10-08       Impact factor: 4.013

6.  Isotope effect analyses provide evidence for an altered transition state for RNA 2'-O-transphosphorylation catalyzed by Zn(2+).

Authors:  Shuming Zhang; Hong Gu; Haoyuan Chen; Emily Strong; Edward W Ollie; Daniel Kellerman; Danni Liang; Masaru Miyagi; Vernon E Anderson; Joseph A Piccirilli; Darrin M York; Michael E Harris
Journal:  Chem Commun (Camb)       Date:  2016-03-25       Impact factor: 6.222

7.  Mechanistic Studies of an Amine Oxidase Derived from d-Amino Acid Oxidase.

Authors:  Elizabeth E Trimmer; Udayanga S Wanninayake; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2017-04-03       Impact factor: 3.162

8.  Mechanism of the Flavoprotein L-Hydroxynicotine Oxidase: Kinetic Mechanism, Substrate Specificity, Reaction Product, and Roles of Active-Site Residues.

Authors:  Paul F Fitzpatrick; Fatemeh Chadegani; Shengnan Zhang; Kenneth M Roberts; Cynthia S Hinck
Journal:  Biochemistry       Date:  2016-01-15       Impact factor: 3.162

9.  Structure and role for active site lid of lactate monooxygenase from Mycobacterium smegmatis.

Authors:  Kelsey M Kean; P Andrew Karplus
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10.  Characterization of Pseudooxynicotine Amine Oxidase of Pseudomonas putida S16 that Is Crucial for Nicotine Degradation.

Authors:  Haiyang Hu; Weiwei Wang; Hongzhi Tang; Ping Xu
Journal:  Sci Rep       Date:  2015-12-04       Impact factor: 4.379

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