Literature DB >> 14692760

Kinetic isotope effects on the rate-limiting step of heme oxygenase catalysis indicate concerted proton transfer/heme hydroxylation.

Roman Davydov1, Toshitaka Matsui, Hiroshi Fujii, Masao Ikeda-Saito, Brian M Hoffman.   

Abstract

Heme oxygenase (HO) catalyzes the O2 and NADPH/cytochrome P450 reductase-dependent conversion of heme to biliverdin, free iron ion, and CO through a process in which the heme participates as both dioxygen-activating prosthetic group and substrate. We earlier confirmed that the first step of HO catalysis is a monooxygenation in which the addition of one electron and two protons to the HO oxy-ferroheme produces ferric-alpha-meso-hydroxyheme (h). Cryoreduction/EPR and ENDOR measurements further showed that hydroperoxo-ferri-HO converts directly to h in a single kinetic step without formation of a Compound I. We here report details of that rate-limiting step. One-electron 77 K cryoreduction of human oxy-HO and annealing at 200 K generates a structurally relaxed hydroperoxo-ferri-HO species, denoted R. We here report the cryoreduction/annealing experiments that directly measure solvent and secondary kinetic isotope effects (KIEs) of the rate-limiting R --> h conversion, using enzyme prepared with meso-deuterated heme and in H2O/D2O buffers to measure the solvent KIE (solv-KIE), and the secondary KIE (sec-KIE) associated with the conversion. This approach is unique in that KIEs measured by monitoring the rate-limiting step are not susceptible to masking by KIEs of other processes, and these results represent the first direct measurement of the KIEs of product formation by a kinetically competent reaction intermediate in any dioxygen-activating heme enzyme.The observation of both solv-KIE(298) = 1.8 and sec-KIE(298) = 0.8 (inverse) indicates that the rate-limiting step for formation of h by HO is a concerted process: proton transfer to the hydroperoxo-ferri-heme through the distal-pocket H-bond network, likely from a carboxyl group acting as a general acid catalyst, occurring in synchrony with bond formation between the terminal hydroperoxo-oxygen atom and the alpha-meso carbon to form a tetrahedral hydroxylated-heme intermediate. Subsequent rearrangement and loss of H2O then generates h.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 14692760     DOI: 10.1021/ja038923s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Connecting nitrogenase intermediates with the kinetic scheme for N2 reduction by a relaxation protocol and identification of the N2 binding state.

Authors:  Dmitriy Lukoyanov; Brett M Barney; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

2.  Investigation of the mechanism of formation of a thiolate-ligated Fe(III)-OOH.

Authors:  Elaine Nam; Pauline E Alokolaro; Rodney D Swartz; Morgan C Gleaves; Jessica Pikul; Julie A Kovacs
Journal:  Inorg Chem       Date:  2011-02-01       Impact factor: 5.165

3.  Reaction of the Co(II)-substrate radical pair catalytic intermediate in coenzyme B12-dependent ethanolamine ammonia-lyase in frozen aqueous solution from 190 to 217 K.

Authors:  Chen Zhu; Kurt Warncke
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

4.  The Asp99-Arg188 salt bridge of the Pseudomonas aeruginosa HemO is critical in allowing conformational flexibility during catalysis.

Authors:  Geoffrey A Heinzl; Weiliang Huang; Elizabeth Robinson; Fengtian Xue; Pierre Moëne-Loccoz; Angela Wilks
Journal:  J Biol Inorg Chem       Date:  2018-09-08       Impact factor: 3.358

Review 5.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

Review 6.  Combining solvent isotope effects with substrate isotope effects in mechanistic studies of alcohol and amine oxidation by enzymes.

Authors:  Paul F Fitzpatrick
Journal:  Biochim Biophys Acta       Date:  2014-10-30

Review 7.  Active intermediates in heme monooxygenase reactions as revealed by cryoreduction/annealing, EPR/ENDOR studies.

Authors:  Roman Davydov; Brian M Hoffman
Journal:  Arch Biochem Biophys       Date:  2010-09-18       Impact factor: 4.013

8.  Comparison of the Mechanisms of Heme Hydroxylation by Heme Oxygenases-1 and -2: Kinetic and Cryoreduction Studies.

Authors:  Roman Davydov; Angela S Fleischhacker; Ireena Bagai; Brian M Hoffman; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2015-12-23       Impact factor: 3.162

9.  Climbing nitrogenase: toward a mechanism of enzymatic nitrogen fixation.

Authors:  Brian M Hoffman; Dennis R Dean; Lance C Seefeldt
Journal:  Acc Chem Res       Date:  2009-05-19       Impact factor: 22.384

10.  Isoporphyrin intermediate in heme oxygenase catalysis. Oxidation of alpha-meso-phenylheme.

Authors:  John P Evans; Fernando Niemevz; Graciela Buldain; Paul Ortiz de Montellano
Journal:  J Biol Chem       Date:  2008-05-16       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.