Literature DB >> 11170421

Probing the relative timing of hydrogen abstraction steps in the flavocytochrome b2 reaction with primary and solvent deuterium isotope effects and mutant enzymes.

P Sobrado1, S C Daubner, P F Fitzpatrick.   

Abstract

Flavocytochrome b(2) catalyzes the oxidation of lactate to pyruvate. Primary deuterium and solvent kinetic isotope effects have been used to determine the relative timing of cleavage of the lactate O-H and C-H bonds by the wild-type enzyme, a mutant protein lacking the heme domain, and the D282N enzyme. The (D)V(max) and (D)(V/K(lactate)) values are both 3.0 with the wild-type enzyme at pH 7.5 and 25 degrees C, increasing to about 3.6 with the flavin domain and increasing further to about 4.5 with the D282N enzyme. Under these conditions, the (D20)V(max) values are 1.38, 1.18, and 0.98 for the wild-type enzyme, the flavin domain, and the D282N enzyme, respectively; the (D20)(V/K(lactate)) values are 0.9, 0.44, and 1.0, respectively. The (D)k(red) value is 5.4 for the wild-type enzyme and 3.5 for the flavin domain, whereas the solvent isotope effect on this kinetic parameter is 1.0 for both enzymes. The V(max) values for the wild-type enzyme and the flavin domain are 32 and 15% limited by viscosity, respectively. In contrast, the V/K(lactate) value for the flavin domain increases about 2-fold at moderate concentrations of glycerol. The data are consistent with a minimal chemical mechanism in which the lactate hydroxyl proton is not in flight in the transition state for C-H bond cleavage and there is an internal equilibrium involving the lactate-bound enzyme prior to C-H bond cleavage which is sensitive to solution conditions. Removal of the hydroxyl proton may occur in this pre-equilibrium.

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Year:  2001        PMID: 11170421     DOI: 10.1021/bi002283d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

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Review 2.  Combining solvent isotope effects with substrate isotope effects in mechanistic studies of alcohol and amine oxidation by enzymes.

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Journal:  J Am Chem Soc       Date:  2022-03-07       Impact factor: 15.419

4.  Structure of human glycolate oxidase in complex with the inhibitor 4-carboxy-5-[(4-chlorophenyl)sulfanyl]-1,2,3-thiadiazole.

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5.  Involvement of ionizable groups in catalysis of human liver glycolate oxidase.

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6.  Insights into the mechanisms of flavoprotein oxidases from kinetic isotope effects.

Authors:  Paul F Fitzpatrick
Journal:  J Labelled Comp Radiopharm       Date:  2007-10       Impact factor: 1.921

7.  Mechanistic and structural studies of H373Q flavocytochrome b2: effects of mutating the active site base.

Authors:  Chi-Lin Tsai; Kuppan Gokulan; Pablo Sobrado; James C Sacchettini; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2007-06-12       Impact factor: 3.162

8.  Pre-steady-state studies of phosphite dehydrogenase demonstrate that hydride transfer is fully rate limiting.

Authors:  Emily J Fogle; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2007-10-20       Impact factor: 3.162

9.  Solvent and primary deuterium isotope effects show that lactate CH and OH bond cleavages are concerted in Y254F flavocytochrome b2, consistent with a hydride transfer mechanism.

Authors:  Pablo Sobrado; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2003-12-30       Impact factor: 3.162

  9 in total

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