Literature DB >> 31046245

Mechanism of the Flavoprotein d-6-Hydroxynicotine Oxidase: Substrate Specificity, pH and Solvent Isotope Effects, and Roles of Key Active-Site Residues.

Paul F Fitzpatrick1, Vi Dougherty1, Bishnu Subedi1, Jesus Quilantan1, Cynthia S Hinck1, Andreina I Lujan1, Jose R Tormos2.   

Abstract

The flavoprotein d-6-hydroxynicotine oxidase catalyzes an early step in the oxidation of ( R)-nicotine, the oxidation of a carbon-nitrogen bond in the pyrrolidine ring of ( R)-6-hydroxynicotine. The enzyme is a member of the vanillyl alcohol oxidase/ p-cresol methylhydroxylase family of flavoproteins. The effects of substrate modifications on the steady-state and rapid-reaction kinetic parameters are not consistent with the quinone-methide mechanism of p-cresol methylhydroxylase. There is no solvent isotope effect on the kcat/ Kamine value with either ( R)-6-hydroxynicotine or the slower substrate ( R)-6-hydroxynornicotine. The effect of pH on the rapid-reaction kinetic parameters establishes that only the neutral form of the substrate and the correctly protonated form of the enzyme bind. The active-site residues Lys348, Glu350, and Glu352 are all properly positioned for substrate binding. The K348M substitution has only a small effect on the kinetic parameters; the E350A and E350Q substitutions decrease the kcat/ Kamine value by ∼20- and ∼220-fold, respectively, and the E352Q substitution decreases this parameter ∼3800-fold. The kcat/ Kamine-pH profile is bell-shaped. The p Ka values in that profile are altered by replacement of ( R)-6-hydroxynicotine with ( R)-6-hydroxynornicotine as the substrate and by the substitutions for Glu350 and Glu352, although the profiles remain bell-shaped. The results are consistent with a network of hydrogen-bonded residues in the active site being involved in binding the neutral form of the amine substrate, followed by the transfer of a hydride from the amine to the flavin.

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Year:  2019        PMID: 31046245      PMCID: PMC6786761          DOI: 10.1021/acs.biochem.9b00297

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

1.  [6-hydroxy-pyridyl-(3)]-ketone].

Authors:  F A GRIES; K DECKER; M BRUEHMUELLER
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1961-09-20

Review 2.  Microbiology and biochemistry of nicotine degradation.

Authors:  Roderich Brandsch
Journal:  Appl Microbiol Biotechnol       Date:  2005-12-07       Impact factor: 4.813

3.  Induction and purification of stereospecific nicotine oxidizing enzymes from Arthrobacter oxidans.

Authors:  K Decker; H Bleeg
Journal:  Biochim Biophys Acta       Date:  1965-08-24

4.  Crystal structure of 6-hydroxy-D-nicotine oxidase from Arthrobacter nicotinovorans.

Authors:  Jochen W A Koetter; Georg E Schulz
Journal:  J Mol Biol       Date:  2005-09-16       Impact factor: 5.469

Review 5.  Combining solvent isotope effects with substrate isotope effects in mechanistic studies of alcohol and amine oxidation by enzymes.

Authors:  Paul F Fitzpatrick
Journal:  Biochim Biophys Acta       Date:  2014-10-30

6.  Structural Analysis Provides Mechanistic Insight into Nicotine Oxidoreductase from Pseudomonas putida.

Authors:  Margarita A Tararina; Kim D Janda; Karen N Allen
Journal:  Biochemistry       Date:  2016-11-18       Impact factor: 3.162

7.  Structures and Mechanism of the Monoamine Oxidase Family.

Authors:  Helena Gaweska; Paul F Fitzpatrick
Journal:  Biomol Concepts       Date:  2011-10-01

8.  Mechanism of the Flavoprotein L-Hydroxynicotine Oxidase: Kinetic Mechanism, Substrate Specificity, Reaction Product, and Roles of Active-Site Residues.

Authors:  Paul F Fitzpatrick; Fatemeh Chadegani; Shengnan Zhang; Kenneth M Roberts; Cynthia S Hinck
Journal:  Biochemistry       Date:  2016-01-15       Impact factor: 3.162

9.  Characterization of environmentally friendly nicotine degradation by Pseudomonas putida biotype A strain S16.

Authors:  Shu Ning Wang; Zhen Liu; Hong Zhi Tang; Jing Meng; Ping Xu
Journal:  Microbiology       Date:  2007-05       Impact factor: 2.777

10.  Solvent and primary deuterium isotope effects show that lactate CH and OH bond cleavages are concerted in Y254F flavocytochrome b2, consistent with a hydride transfer mechanism.

Authors:  Pablo Sobrado; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2003-12-30       Impact factor: 3.162

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