Literature DB >> 25260043

Recent advances in natural product discovery.

Yunzi Luo1, Ryan E Cobb1, Huimin Zhao2.   

Abstract

Natural products have been and continue to be the source and inspiration for a substantial fraction of human therapeutics. Although the pharmaceutical industry has largely turned its back on natural product discovery efforts, such efforts continue to flourish in academia with promising results. Natural products have traditionally been identified from a top-down perspective, but more recently genomics- and bioinformatics-guided bottom-up approaches have provided powerful alternative strategies. Here we review recent advances in natural product discovery from both angles, including diverse sampling and innovative culturing and screening approaches, as well as genomics-driven discovery and genetic manipulation techniques for both native and heterologous expression.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25260043      PMCID: PMC4253731          DOI: 10.1016/j.copbio.2014.09.002

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  58 in total

Review 1.  Genomics-inspired discovery of natural products.

Authors:  Jaclyn M Winter; Swantje Behnken; Christian Hertweck
Journal:  Curr Opin Chem Biol       Date:  2010-11-25       Impact factor: 8.822

Review 2.  Strategies for mining fungal natural products.

Authors:  Philipp Wiemann; Nancy P Keller
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-22       Impact factor: 3.346

3.  Prototype of an intertwined secondary-metabolite supercluster.

Authors:  Philipp Wiemann; Chun-Jun Guo; Jonathan M Palmer; Relebohile Sekonyela; Clay C C Wang; Nancy P Keller
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

Review 4.  Combinatorial biosynthesis of polyketides--a perspective.

Authors:  Fong T Wong; Chaitan Khosla
Journal:  Curr Opin Chem Biol       Date:  2012-02-16       Impact factor: 8.822

5.  Rapid characterization and engineering of natural product biosynthetic pathways via DNA assembler.

Authors:  Zengyi Shao; Yunzi Luo; Huimin Zhao
Journal:  Mol Biosyst       Date:  2011-02-16

6.  Illuminating the diversity of aromatic polyketide synthases in Aspergillus nidulans.

Authors:  Manmeet Ahuja; Yi-Ming Chiang; Shu-Lin Chang; Mike B Praseuth; Ruth Entwistle; James F Sanchez; Hsien-Chun Lo; Hsu-Hua Yeh; Berl R Oakley; Clay C C Wang
Journal:  J Am Chem Soc       Date:  2012-05-01       Impact factor: 15.419

7.  Molecular genetic characterization of the biosynthesis cluster of a prenylated isoindolinone alkaloid aspernidine A in Aspergillus nidulans.

Authors:  Junko Yaegashi; Mike B Praseuth; Shiaw-Wei Tyan; James F Sanchez; Ruth Entwistle; Yi-Ming Chiang; Berl R Oakley; Clay C C Wang
Journal:  Org Lett       Date:  2013-05-24       Impact factor: 6.005

Review 8.  Phosphonate biosynthesis and catabolism: a treasure trove of unusual enzymology.

Authors:  Spencer C Peck; Wilfred A van der Donk
Journal:  Curr Opin Chem Biol       Date:  2013-07-17       Impact factor: 8.822

9.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

10.  Activation and characterization of a cryptic polycyclic tetramate macrolactam biosynthetic gene cluster.

Authors:  Yunzi Luo; Hua Huang; Jing Liang; Meng Wang; Lu Lu; Zengyi Shao; Ryan E Cobb; Huimin Zhao
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  47 in total

1.  Autophagy is associated with cucurbitacin D-induced apoptosis in human T cell leukemia cells.

Authors:  Tsukasa Nakanishi; Yuan Song; Cuiying He; Duo Wang; Kentaro Morita; Junichi Tsukada; Tamotsu Kanazawa; Yasuhiro Yoshida
Journal:  Med Oncol       Date:  2016-02-25       Impact factor: 3.064

Review 2.  Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.

Authors:  Arvind K Chavali; Seung Y Rhee
Journal:  Brief Bioinform       Date:  2018-09-28       Impact factor: 11.622

3.  Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus Moorea.

Authors:  Tiago Leao; Guilherme Castelão; Anton Korobeynikov; Emily A Monroe; Sheila Podell; Evgenia Glukhov; Eric E Allen; William H Gerwick; Lena Gerwick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

Review 4.  Heterologous expression-facilitated natural products' discovery in actinomycetes.

Authors:  Min Xu; Gerard D Wright
Journal:  J Ind Microbiol Biotechnol       Date:  2018-11-16       Impact factor: 3.346

5.  A Maldiisotopic Approach to Discover Natural Products: Cryptomaldamide, a Hybrid Tripeptide from the Marine Cyanobacterium Moorea producens.

Authors:  Robin B Kinnel; Eduardo Esquenazi; Tiago Leao; Nathan Moss; Emily Mevers; Alban R Pereira; Emily A Monroe; Anton Korobeynikov; Thomas F Murray; David Sherman; Lena Gerwick; Pieter C Dorrestein; William H Gerwick
Journal:  J Nat Prod       Date:  2017-04-27       Impact factor: 4.050

6.  Calothrixamides A and B from the Cultured Cyanobacterium Calothrix sp. UIC 10520.

Authors:  Camila M Crnkovic; Aleksej Krunic; Daniel S May; Tyler A Wilson; Diana Kao; Joanna E Burdette; James R Fuchs; Nicholas H Oberlies; Jimmy Orjala
Journal:  J Nat Prod       Date:  2018-09-07       Impact factor: 4.050

Review 7.  Renaissance in phytomedicines: promising implications of NGS technologies.

Authors:  Sonal Sharma; Neeta Shrivastava
Journal:  Planta       Date:  2016-03-22       Impact factor: 4.116

Review 8.  Synthetic Biology of Natural Products.

Authors:  Rainer Breitling; Eriko Takano
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-10-03       Impact factor: 10.005

Review 9.  Genome Mining as New Challenge in Natural Products Discovery.

Authors:  Luisa Albarano; Roberta Esposito; Nadia Ruocco; Maria Costantini
Journal:  Mar Drugs       Date:  2020-04-09       Impact factor: 5.118

10.  Discovery of phosphonic acid natural products by mining the genomes of 10,000 actinomycetes.

Authors:  Kou-San Ju; Jiangtao Gao; James R Doroghazi; Kwo-Kwang A Wang; Christopher J Thibodeaux; Steven Li; Emily Metzger; John Fudala; Joleen Su; Jun Kai Zhang; Jaeheon Lee; Joel P Cioni; Bradley S Evans; Ryuichi Hirota; David P Labeda; Wilfred A van der Donk; William W Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

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