Literature DB >> 30446891

Heterologous expression-facilitated natural products' discovery in actinomycetes.

Min Xu1, Gerard D Wright2.   

Abstract

Actinomycetes produce many of the drugs essential for human and animal health as well as crop protection. Genome sequencing projects launched over the past two decades reveal dozens of cryptic natural product biosynthetic gene clusters in each actinomycete genome that are not expressed under regular laboratory conditions. This so-called 'chemical dark matter' represents a potentially rich untapped resource for drug discovery in the genomic era. Through improved understanding of natural product biosynthetic logic coupled with the development of bioinformatic and genetic tools, we are increasingly able to access this 'dark matter' using a wide variety of strategies with downstream potential application in drug development. In this review, we discuss recent research progress in the field of cloning of natural product biosynthetic gene clusters and their heterologous expression in validating the potential of this methodology to drive next-generation drug discovery.

Entities:  

Keywords:  Drug discovery; Heterologous expression; Natural products; Streptomyces

Mesh:

Substances:

Year:  2018        PMID: 30446891     DOI: 10.1007/s10295-018-2097-2

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  130 in total

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Authors:  J P Muyrers; Y Zhang; F Buchholz; A F Stewart
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Authors:  A R Poteete
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Review 3.  Polyketide biosynthesis: a millennium review.

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Authors:  Jeff Pootoolal; Michael G Thomas; C Gary Marshall; John M Neu; Brian K Hubbard; Christopher T Walsh; Gerard D Wright
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7.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

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Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

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Authors:  Rosa Alduina; Simona De Grazia; Luca Dolce; Paola Salerno; Margherita Sosio; Stefano Donadio; Anna M Puglia
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Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

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  13 in total

Review 1.  Recent metabolomics and gene editing approaches for synthesis of microbial secondary metabolites for drug discovery and development.

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Review 5.  The Application of Ribosome Engineering to Natural Product Discovery and Yield Improvement in Streptomyces.

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6.  Unlocking the potential of natural products in drug discovery.

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Review 7.  Engineering actinomycetes for biosynthesis of macrolactone polyketides.

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8.  Label-free proteomic dissection on dptP-deletion mutant uncovers dptP involvement in strain growth and daptomycin tolerance of Streptomyces roseosporus.

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10.  Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.

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