Literature DB >> 24146366

Strategies for mining fungal natural products.

Philipp Wiemann1, Nancy P Keller.   

Abstract

Fungi are well known for their ability to produce a multitude of natural products. On the one hand their potential to provide beneficial antibiotics and immunosuppressants has been maximized by the pharmaceutical industry to service the market with cost-efficient drugs. On the other hand identification of trace amounts of known mycotoxins in food and feed samples is of major importance to ensure consumer health and safety. Although several fungal natural products, their biosynthesis and regulation are known today, recent genome sequences of hundreds of fungal species illustrate that the secondary metabolite potential of fungi has been substantially underestimated. Since expression of genes and subsequent production of the encoded metabolites are frequently cryptic or silent under standard laboratory conditions, strategies for activating these hidden new compounds are essential. This review will cover the latest advances in fungal genome mining undertaken to unlock novel products.

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Year:  2013        PMID: 24146366     DOI: 10.1007/s10295-013-1366-3

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  187 in total

Review 1.  Bioactive microbial metabolites.

Authors:  János Bérdy
Journal:  J Antibiot (Tokyo)       Date:  2005-01       Impact factor: 2.649

2.  Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans.

Authors:  Sebastian Bergmann; Julia Schümann; Kirstin Scherlach; Corinna Lange; Axel A Brakhage; Christian Hertweck
Journal:  Nat Chem Biol       Date:  2007-03-18       Impact factor: 15.040

3.  Recombination-mediated PCR-directed plasmid construction in vivo in yeast.

Authors:  K R Oldenburg; K T Vo; S Michaelis; C Paddon
Journal:  Nucleic Acids Res       Date:  1997-01-15       Impact factor: 16.971

4.  Lae1 regulates expression of multiple secondary metabolite gene clusters in Fusarium verticillioides.

Authors:  Robert A E Butchko; Daren W Brown; Mark Busman; Bettina Tudzynski; Philipp Wiemann
Journal:  Fungal Genet Biol       Date:  2012-06-17       Impact factor: 3.495

5.  Genomic mining for Aspergillus natural products.

Authors:  Jin Woo Bok; Dirk Hoffmeister; Lori A Maggio-Hall; Renato Murillo; Jeremy D Glasner; Nancy P Keller
Journal:  Chem Biol       Date:  2006-01

6.  Evidence for two catalytically independent clusters of active sites in a functional modular polyketide synthase.

Authors:  C M Kao; R Pieper; D E Cane; C Khosla
Journal:  Biochemistry       Date:  1996-09-24       Impact factor: 3.162

7.  Cloning and bioinformatic analysis of lovastatin biosynthesis regulatory gene lovE.

Authors:  Xin Huang; Hao-ming Li
Journal:  Chin Med J (Engl)       Date:  2009-08-05       Impact factor: 2.628

8.  Breaking the silence: protein stabilization uncovers silenced biosynthetic gene clusters in the fungus Aspergillus nidulans.

Authors:  Jennifer Gerke; Ozgür Bayram; Kirstin Feussner; Manuel Landesfeind; Ekaterina Shelest; Ivo Feussner; Gerhard H Braus
Journal:  Appl Environ Microbiol       Date:  2012-09-21       Impact factor: 4.792

9.  Distinct roles for VeA and LaeA in development and pathogenesis of Aspergillus flavus.

Authors:  Saori Amaike; Nancy P Keller
Journal:  Eukaryot Cell       Date:  2009-05-01

10.  Gibberellin biosynthetic pathway in Gibberella fujikuroi: evidence for a gene cluster.

Authors:  B Tudzynski; K Hölter
Journal:  Fungal Genet Biol       Date:  1998-12       Impact factor: 3.495

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  64 in total

Review 1.  Advances in linking polyketides and non-ribosomal peptides to their biosynthetic gene clusters in Fusarium.

Authors:  Mikkel Rank Nielsen; Teis Esben Sondergaard; Henriette Giese; Jens Laurids Sørensen
Journal:  Curr Genet       Date:  2019-05-28       Impact factor: 3.886

2.  Sesquiterpene Synthase-3-Hydroxy-3-Methylglutaryl Coenzyme A Synthase Fusion Protein Responsible for Hirsutene Biosynthesis in Stereum hirsutum.

Authors:  Christopher M Flynn; Claudia Schmidt-Dannert
Journal:  Appl Environ Microbiol       Date:  2018-05-17       Impact factor: 4.792

3.  Two new polyketides from the ascomycete fungus Leptosphaeria sp.

Authors:  Jie Lin; Renlei Wang; Guohua Xu; Zhengfeng Ding; Xueshen Zhu; Erwei Li; Ling Liu
Journal:  J Antibiot (Tokyo)       Date:  2017-02-15       Impact factor: 2.649

4.  Regulatory cascade and biological activity of Beauveria bassiana oosporein that limits bacterial growth after host death.

Authors:  Yanhua Fan; Xi Liu; Nemat O Keyhani; Guirong Tang; Yan Pei; Wenwen Zhang; Sheng Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-13       Impact factor: 11.205

Review 5.  Recent advances in natural product discovery.

Authors:  Yunzi Luo; Ryan E Cobb; Huimin Zhao
Journal:  Curr Opin Biotechnol       Date:  2014-09-26       Impact factor: 9.740

6.  Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

Authors:  Ronald P de Vries; Robert Riley; Ad Wiebenga; Guillermo Aguilar-Osorio; Sotiris Amillis; Cristiane Akemi Uchima; Gregor Anderluh; Mojtaba Asadollahi; Marion Askin; Kerrie Barry; Evy Battaglia; Özgür Bayram; Tiziano Benocci; Susanna A Braus-Stromeyer; Camila Caldana; David Cánovas; Gustavo C Cerqueira; Fusheng Chen; Wanping Chen; Cindy Choi; Alicia Clum; Renato Augusto Corrêa Dos Santos; André Ricardo de Lima Damásio; George Diallinas; Tamás Emri; Erzsébet Fekete; Michel Flipphi; Susanne Freyberg; Antonia Gallo; Christos Gournas; Rob Habgood; Matthieu Hainaut; María Laura Harispe; Bernard Henrissat; Kristiina S Hildén; Ryan Hope; Abeer Hossain; Eugenia Karabika; Levente Karaffa; Zsolt Karányi; Nada Kraševec; Alan Kuo; Harald Kusch; Kurt LaButti; Ellen L Lagendijk; Alla Lapidus; Anthony Levasseur; Erika Lindquist; Anna Lipzen; Antonio F Logrieco; Andrew MacCabe; Miia R Mäkelä; Iran Malavazi; Petter Melin; Vera Meyer; Natalia Mielnichuk; Márton Miskei; Ákos P Molnár; Giuseppina Mulé; Chew Yee Ngan; Margarita Orejas; Erzsébet Orosz; Jean Paul Ouedraogo; Karin M Overkamp; Hee-Soo Park; Giancarlo Perrone; Francois Piumi; Peter J Punt; Arthur F J Ram; Ana Ramón; Stefan Rauscher; Eric Record; Diego Mauricio Riaño-Pachón; Vincent Robert; Julian Röhrig; Roberto Ruller; Asaf Salamov; Nadhira S Salih; Rob A Samson; Erzsébet Sándor; Manuel Sanguinetti; Tabea Schütze; Kristina Sepčić; Ekaterina Shelest; Gavin Sherlock; Vicky Sophianopoulou; Fabio M Squina; Hui Sun; Antonia Susca; Richard B Todd; Adrian Tsang; Shiela E Unkles; Nathalie van de Wiele; Diana van Rossen-Uffink; Juliana Velasco de Castro Oliveira; Tammi C Vesth; Jaap Visser; Jae-Hyuk Yu; Miaomiao Zhou; Mikael R Andersen; David B Archer; Scott E Baker; Isabelle Benoit; Axel A Brakhage; Gerhard H Braus; Reinhard Fischer; Jens C Frisvad; Gustavo H Goldman; Jos Houbraken; Berl Oakley; István Pócsi; Claudio Scazzocchio; Bernhard Seiboth; Patricia A vanKuyk; Jennifer Wortman; Paul S Dyer; Igor V Grigoriev
Journal:  Genome Biol       Date:  2017-02-14       Impact factor: 13.583

7.  Molecular epigenetic approach activates silent gene cluster producing dimeric bis-spiro-azaphilones in Chaetomium globosum CBS148.51.

Authors:  Meng-Hua Wang; Tao Jiang; Gang Ding; Shu-Bin Niu; Xue-Wei Wang; Meng Yu; Yu-Cheng Gu; Qiu-Bo Zhang; Jia-Huan Chen; Hong-Mei Jia; Zhong-Mei Zou
Journal:  J Antibiot (Tokyo)       Date:  2017-03-01       Impact factor: 2.649

8.  Conditioned media and organic elicitors underpin the production of potent antiplasmodial metabolites by endophytic fungi from Cameroonian medicinal plants.

Authors:  Rufin Marie Kouipou Toghueo; Dinkar Sahal; Íñigo Zabalgogeazcoa; Bill Baker; Fabrice Fekam Boyom
Journal:  Parasitol Res       Date:  2018-05-24       Impact factor: 2.289

9.  Genome of Diaporthe sp. provides insights into the potential inter-phylum transfer of a fungal sesquiterpenoid biosynthetic pathway.

Authors:  Jose Guedes de Sena Filho; Maureen B Quin; Daniel J Spakowicz; Jeffrey J Shaw; Kaury Kucera; Brian Dunican; Scott A Strobel; Claudia Schmidt-Dannert
Journal:  Fungal Biol       Date:  2016-04-12

Review 10.  Nature and nurture: confluence of pathway determinism with metabolic and chemical serendipity diversifies Monascus azaphilone pigments.

Authors:  Wanping Chen; Yanli Feng; István Molnár; Fusheng Chen
Journal:  Nat Prod Rep       Date:  2019-04-17       Impact factor: 13.423

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