Literature DB >> 23870698

Phosphonate biosynthesis and catabolism: a treasure trove of unusual enzymology.

Spencer C Peck1, Wilfred A van der Donk.   

Abstract

Natural product biosynthesis has proven a fertile ground for the discovery of novel chemistry. Herein we review the progress made in elucidating the biosynthetic pathways of pan class="Chemical">phosphonate and pan class="Chemical">phosphinate natural products such as the antibacterial compounds dehydrophos and fosfomycin, the herbicidal phosphinothricin-containing peptides, and the antimalarial compound FR-900098. In each case, investigation of the pathway has yielded unusual, and often unprecedented, biochemistry. Likewise, recent investigations have uncovered novel ways to cleave the CP bond to yield phosphate under phosphorus starvation conditions. These include the discovery of novel oxidative cleavage of the CP bond catalyzed by PhnY and PhnZ as well as phosphonohydrolases that liberate phosphate from phosphonoacetate. Perhaps the crown jewel of phosphonate catabolism has been the recent resolution of the longstanding problem of the C-P lyase responsible for reductively cleaving the CP bond of a number of different phosphonates to release phosphate. Taken together, the strides made on both metabolic and catabolic fronts illustrate an array of fascinating biochemistry.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23870698      PMCID: PMC3764496          DOI: 10.1016/j.cbpa.2013.06.018

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  55 in total

1.  Protein purification and function assignment of the epoxidase catalyzing the formation of fosfomycin.

Authors:  P Liu; K Murakami; T Seki; X He; S M Yeung; T Kuzuyama; H Seto; H Liu
Journal:  J Am Chem Soc       Date:  2001-05-16       Impact factor: 15.419

2.  Genetic and biochemical characterization of a pathway for the degradation of 2-aminoethylphosphonate in Sinorhizobium meliloti 1021.

Authors:  Svetlana A Borisova; Harry D Christman; M E Mourey Metcalf; Nurul A Zulkepli; Jun Kai Zhang; Wilfred A van der Donk; William W Metcalf
Journal:  J Biol Chem       Date:  2011-05-04       Impact factor: 5.157

3.  Structural and mechanistic insights into C-P bond hydrolysis by phosphonoacetate hydrolase.

Authors:  Vinayak Agarwal; Svetlana A Borisova; William W Metcalf; Wilfred A van der Donk; Satish K Nair
Journal:  Chem Biol       Date:  2011-10-28

4.  Ferric superoxide and ferric hydroxide are used in the catalytic mechanism of hydroxyethylphosphonate dioxygenase: a density functional theory investigation.

Authors:  Hajime Hirao; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2010-12-01       Impact factor: 15.419

5.  Different biosynthetic pathways to fosfomycin in Pseudomonas syringae and Streptomyces species.

Authors:  Seung Young Kim; Kou-San Ju; William W Metcalf; Bradley S Evans; Tomohisa Kuzuyama; Wilfred A van der Donk
Journal:  Antimicrob Agents Chemother       Date:  2012-05-21       Impact factor: 5.191

6.  1-Deoxy-D-xylulose 5-phosphate synthase catalyzes a novel random sequential mechanism.

Authors:  Leighanne A Brammer; Jessica M Smith; Herschel Wade; Caren Freel Meyers
Journal:  J Biol Chem       Date:  2011-08-30       Impact factor: 5.157

Review 7.  Structure and mechanism of enzymes involved in biosynthesis and breakdown of the phosphonates fosfomycin, dehydrophos, and phosphinothricin.

Authors:  Satish K Nair; Wilfred A van der Donk
Journal:  Arch Biochem Biophys       Date:  2010-09-18       Impact factor: 4.013

8.  Biosynthetic gene cluster of the herbicide phosphinothricin tripeptide from Streptomyces viridochromogenes Tü494.

Authors:  Dirk Schwartz; Susanne Berger; Eva Heinzelmann; Konstanze Muschko; Kathrin Welzel; Wolfgang Wohlleben
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

9.  Reassignment of the structure of the antibiotic A53868 reveals an unusual amino dehydrophosphonic acid.

Authors:  John T Whitteck; Weijuan Ni; Benjamin M Griffin; Andrew C Eliot; Paul M Thomas; Neil L Kelleher; William W Metcalf; Wilfred A van der Donk
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

10.  Mechanistic studies of an unprecedented enzyme-catalysed 1,2-phosphono-migration reaction.

Authors:  Wei-chen Chang; Mishtu Dey; Pinghua Liu; Steven O Mansoorabadi; Sung-Ju Moon; Zongbao K Zhao; Catherine L Drennan; Hung-wen Liu
Journal:  Nature       Date:  2013-04-04       Impact factor: 49.962

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  14 in total

Review 1.  Recent advances in natural product discovery.

Authors:  Yunzi Luo; Ryan E Cobb; Huimin Zhao
Journal:  Curr Opin Biotechnol       Date:  2014-09-26       Impact factor: 9.740

2.  Potent inhibition of the C-P lyase nucleosidase PhnI by Immucillin-A triphosphate.

Authors:  Siddhesh S Kamat; Emmanuel S Burgos; Frank M Raushel
Journal:  Biochemistry       Date:  2013-10-11       Impact factor: 3.162

3.  A common late-stage intermediate in catalysis by 2-hydroxyethyl-phosphonate dioxygenase and methylphosphonate synthase.

Authors:  Spencer C Peck; Jonathan R Chekan; Emily C Ulrich; Satish K Nair; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2015-02-26       Impact factor: 15.419

4.  A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.

Authors:  Lauren J Rajakovich; Maria-Eirini Pandelia; Andrew J Mitchell; Wei-Chen Chang; Bo Zhang; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2019-03-07       Impact factor: 3.162

5.  An Unusual Oxidative Rearrangement Catalyzed by a Divergent Member of the 2-Oxoglutarate-Dependent Dioxygenase Superfamily during Biosynthesis of Dehydrofosmidomycin.

Authors:  Elizabeth I Parkinson; Hani G Lakkis; Amir A Alwali; Mary Elizabeth M Metcalf; Ramya Modi; William W Metcalf
Journal:  Angew Chem Int Ed Engl       Date:  2022-06-07       Impact factor: 16.823

6.  Freshwater bacteria release methane as a byproduct of phosphorus acquisition.

Authors:  Mengyin Yao; Cynthia Henny; Julia A Maresca
Journal:  Appl Environ Microbiol       Date:  2016-09-30       Impact factor: 4.792

7.  Structure and function of phosphonoacetaldehyde dehydrogenase: the missing link in phosphonoacetate formation.

Authors:  Vinayak Agarwal; Spencer C Peck; Jui-Hui Chen; Svetlana A Borisova; Jonathan R Chekan; Wilfred A van der Donk; Satish K Nair
Journal:  Chem Biol       Date:  2013-12-19

8.  Biosynthesis of fosfazinomycin is a convergent process.

Authors:  Zedu Huang; Kwo-Kwang A Wang; Jaeheon Lee; Wilfred A van der Donk
Journal:  Chem Sci       Date:  2015-02-01       Impact factor: 9.825

9.  O-H Activation by an Unexpected Ferryl Intermediate during Catalysis by 2-Hydroxyethylphosphonate Dioxygenase.

Authors:  Spencer C Peck; Chen Wang; Laura M K Dassama; Bo Zhang; Yisong Guo; Lauren J Rajakovich; J Martin Bollinger; Carsten Krebs; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2017-01-31       Impact factor: 15.419

10.  Conserved biosynthetic pathways for phosalacine, bialaphos and newly discovered phosphonic acid natural products.

Authors:  Joshua A V Blodgett; Jun Kai Zhang; Xiaomin Yu; William W Metcalf
Journal:  J Antibiot (Tokyo)       Date:  2015-09-02       Impact factor: 2.649

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