Literature DB >> 22342766

Combinatorial biosynthesis of polyketides--a perspective.

Fong T Wong1, Chaitan Khosla.   

Abstract

Since their discovery, polyketide synthases have been attractive targets of biosynthetic engineering to make 'unnatural' natural products. Although combinatorial biosynthesis has made encouraging advances over the past two decades, the field remains in its infancy. In this enzyme-centric perspective, we discuss the scientific and technological challenges that could accelerate the adoption of combinatorial biosynthesis as a method of choice for the preparation of encoded libraries of bioactive small molecules. Borrowing a page from the protein structure prediction community, we propose a periodic challenge program to vet the most promising methods in the field, and to foster the collective development of useful tools and algorithms.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22342766      PMCID: PMC3328608          DOI: 10.1016/j.cbpa.2012.01.018

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  44 in total

Review 1.  Intermodular communication in polyketide synthases: comparing the role of protein-protein interactions to those in other multidomain proteins.

Authors:  S Y Tsuji; N Wu; C Khosla
Journal:  Biochemistry       Date:  2001-02-27       Impact factor: 3.162

Review 2.  Biosynthesis of polyketides by trans-AT polyketide synthases.

Authors:  Jörn Piel
Journal:  Nat Prod Rep       Date:  2010-05-12       Impact factor: 13.423

Review 3.  Methods and options for the heterologous production of complex natural products.

Authors:  Haoran Zhang; Brett A Boghigian; John Armando; Blaine A Pfeifer
Journal:  Nat Prod Rep       Date:  2010-11-09       Impact factor: 13.423

Review 4.  Manufacturing molecules through metabolic engineering.

Authors:  Jay D Keasling
Journal:  Science       Date:  2010-12-03       Impact factor: 47.728

5.  The Catalytic Diversity of Multimodular Polyketide Synthases: Natural Product Biosynthesis Beyond Textbook Assembly Rules.

Authors:  Tobias A M Gulder; Michael F Freeman; Jörn Piel
Journal:  Top Curr Chem       Date:  2011-03-01

6.  Identification of a bioactive 51-membered macrolide complex by activation of a silent polyketide synthase in Streptomyces ambofaciens.

Authors:  Luisa Laureti; Lijiang Song; Sheng Huang; Christophe Corre; Pierre Leblond; Gregory L Challis; Bertrand Aigle
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

Review 7.  Metabolic engineering for the production of natural products.

Authors:  Lauren B Pickens; Yi Tang; Yit-Heng Chooi
Journal:  Annu Rev Chem Biomol Eng       Date:  2011       Impact factor: 11.059

8.  Engineered biosynthesis of a complete macrolactone in a heterologous host.

Authors:  C M Kao; L Katz; C Khosla
Journal:  Science       Date:  1994-07-22       Impact factor: 47.728

9.  Spongistatin 1, a highly cytotoxic, sponge-derived, marine natural product that inhibits mitosis, microtubule assembly, and the binding of vinblastine to tubulin.

Authors:  R Bai; Z A Cichacz; C L Herald; G R Pettit; E Hamel
Journal:  Mol Pharmacol       Date:  1993-10       Impact factor: 4.436

10.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

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  45 in total

1.  Identification of the biosynthetic gene cluster for the antibiotic polyketide L-155,175 in Streptomyces hygroscopicus.

Authors:  Eun Young Kim; Jae Woo Han; Jee Yeon Lee; Beom Seok Kim
Journal:  Folia Microbiol (Praha)       Date:  2012-06-06       Impact factor: 2.099

2.  Probing Selectivity and Creating Structural Diversity Through Hybrid Polyketide Synthases.

Authors:  Aaron A Koch; Jennifer J Schmidt; Andrew N Lowell; Douglas A Hansen; Katherine M Coburn; Joseph A Chemler; David H Sherman
Journal:  Angew Chem Int Ed Engl       Date:  2020-06-05       Impact factor: 15.336

Review 3.  Engineering the acyltransferase substrate specificity of assembly line polyketide synthases.

Authors:  Briana J Dunn; Chaitan Khosla
Journal:  J R Soc Interface       Date:  2013-05-29       Impact factor: 4.118

Review 4.  Importance of microbial natural products and the need to revitalize their discovery.

Authors:  Arnold L Demain
Journal:  J Ind Microbiol Biotechnol       Date:  2013-08-30       Impact factor: 3.346

Review 5.  Evolutionary concepts in natural products discovery: what actinomycetes have taught us.

Authors:  Janko Diminic; Antonio Starcevic; Mohamed Lisfi; Damir Baranasic; Ranko Gacesa; Daslav Hranueli; Paul F Long; John Cullum; Jurica Zucko
Journal:  J Ind Microbiol Biotechnol       Date:  2013-09-24       Impact factor: 3.346

6.  Engineering Saccharomyces cerevisiae for production of simvastatin.

Authors:  Carly M Bond; Yi Tang
Journal:  Metab Eng       Date:  2018-09-10       Impact factor: 9.783

Review 7.  DNA assembly techniques for next-generation combinatorial biosynthesis of natural products.

Authors:  Ryan E Cobb; Jonathan C Ning; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

Review 8.  Recent advances in natural product discovery.

Authors:  Yunzi Luo; Ryan E Cobb; Huimin Zhao
Journal:  Curr Opin Biotechnol       Date:  2014-09-26       Impact factor: 9.740

Review 9.  Leveraging structure for enzyme function prediction: methods, opportunities, and challenges.

Authors:  Matthew P Jacobson; Chakrapani Kalyanaraman; Suwen Zhao; Boxue Tian
Journal:  Trends Biochem Sci       Date:  2014-07-02       Impact factor: 13.807

10.  Vinylogous chain branching catalysed by a dedicated polyketide synthase module.

Authors:  Tom Bretschneider; Joel B Heim; Daniel Heine; Robert Winkler; Benjamin Busch; Björn Kusebauch; Thilo Stehle; Georg Zocher; Christian Hertweck
Journal:  Nature       Date:  2013-09-18       Impact factor: 49.962

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