Literature DB >> 21111667

Genomics-inspired discovery of natural products.

Jaclyn M Winter1, Swantje Behnken, Christian Hertweck.   

Abstract

The massive surge in genome sequencing projects has opened our eyes to the overlooked biosynthetic potential and metabolic diversity of microorganisms. While traditional approaches have been successful at identifying many useful therapeutic agents from these organisms, new tactics are needed in order to exploit their true biosynthetic potential. Several genomics-inspired strategies have been successful in unveiling new metabolites that were overlooked under standard fermentation and detection conditions. In addition, genome sequences have given us valuable insight for genetically engineering biosynthesis gene clusters that remain silent or are poorly expressed in the absence of a specific trigger. As more genome sequences are becoming available, we are noticing the emergence of underexplored or neglected organisms as alternative resources for new therapeutic agents.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21111667     DOI: 10.1016/j.cbpa.2010.10.020

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  62 in total

1.  Microbial genome mining answers longstanding biosynthetic questions.

Authors:  Jason M Crawford; Jon Clardy
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-01       Impact factor: 11.205

Review 2.  Merging chemical ecology with bacterial genome mining for secondary metabolite discovery.

Authors:  Maria I Vizcaino; Xun Guo; Jason M Crawford
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

Review 3.  Recent advances in natural product discovery.

Authors:  Yunzi Luo; Ryan E Cobb; Huimin Zhao
Journal:  Curr Opin Biotechnol       Date:  2014-09-26       Impact factor: 9.740

Review 4.  An Analysis of Biosynthesis Gene Clusters and Bioactivity of Marine Bacterial Symbionts.

Authors:  Nadarajan Viju; Stanislaus Mary Josephine Punitha; Sathianeson Satheesh
Journal:  Curr Microbiol       Date:  2021-05-26       Impact factor: 2.188

5.  Dihydrophenylalanine: a prephenate-derived Photorhabdus luminescens antibiotic and intermediate in dihydrostilbene biosynthesis.

Authors:  Jason M Crawford; Sarah A Mahlstedt; Steven J Malcolmson; Jon Clardy; Christopher T Walsh
Journal:  Chem Biol       Date:  2011-09-23

6.  Molecular genetic analysis reveals that a nonribosomal peptide synthetase-like (NRPS-like) gene in Aspergillus nidulans is responsible for microperfuranone biosynthesis.

Authors:  Hsu-Hua Yeh; Yi-Ming Chiang; Ruth Entwistle; Manmeet Ahuja; Kuan-Han Lee; Kenneth S Bruno; Tung-Kung Wu; Berl R Oakley; Clay C C Wang
Journal:  Appl Microbiol Biotechnol       Date:  2012-05-25       Impact factor: 4.813

7.  Atlas for drug discovery.

Authors:  Pierre Stallforth; Jon Clardy
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-19       Impact factor: 11.205

8.  Genomic insights into specialized metabolism in the marine actinomycete Salinispora.

Authors:  Anne-Catrin Letzel; Jing Li; Gregory C A Amos; Natalie Millán-Aguiñaga; Joape Ginigini; Usama R Abdelmohsen; Susana P Gaudêncio; Nadine Ziemert; Bradley S Moore; Paul R Jensen
Journal:  Environ Microbiol       Date:  2017-08-14       Impact factor: 5.491

9.  Metatranscriptome profiling of a harmful algal bloom.

Authors:  Endymion D Cooper; Bastian Bentlage; Theodore R Gibbons; Tsvetan R Bachvaroff; Charles F Delwiche
Journal:  Harmful Algae       Date:  2014-07       Impact factor: 4.273

10.  Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules.

Authors:  Roland D Kersten; Nadine Ziemert; David J Gonzalez; Brendan M Duggan; Victor Nizet; Pieter C Dorrestein; Bradley S Moore
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

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