Literature DB >> 25216352

Optogenetic approaches to cell migration and beyond.

Matthew Weitzman1, Klaus M Hahn2.   

Abstract

Optogenetics, the use of genetically encoded tools to control protein function with light, can generate localized changes in signaling within living cells and animals. For years it has been focused on channel proteins for neurobiology, but has recently expanded to cover many different types of proteins, using a broad array of different protein engineering approaches. These methods have largely been directed at proteins involved in motility, cytoskeletal regulation and gene expression. This review provides a survey of non-channel proteins that have been engineered for optogenetics. Existing molecules are used to illustrate the advantages and disadvantages of the many imaginative new approaches that the reader can use to create light-controlled proteins.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25216352      PMCID: PMC4215803          DOI: 10.1016/j.ceb.2014.08.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  60 in total

1.  Optically triggering spatiotemporally confined GPCR activity in a cell and programming neurite initiation and extension.

Authors:  W K Ajith Karunarathne; Lopamudra Giri; Vani Kalyanaraman; N Gautam
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-11       Impact factor: 11.205

Review 2.  Guiding lights: recent developments in optogenetic control of biochemical signals.

Authors:  Taofei Yin; Yi I Wu
Journal:  Pflugers Arch       Date:  2013-02-16       Impact factor: 3.657

3.  Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cells.

Authors:  Remco P Crefcoeur; Ruohe Yin; Roman Ulm; Thanos D Halazonetis
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

4.  Identification of natural and artificial DNA substrates for light-activated LOV-HTH transcription factor EL222.

Authors:  Giomar Rivera-Cancel; Laura B Motta-Mena; Kevin H Gardner
Journal:  Biochemistry       Date:  2012-12-10       Impact factor: 3.162

5.  Nuclear actin network assembly by formins regulates the SRF coactivator MAL.

Authors:  Christian Baarlink; Haicui Wang; Robert Grosse
Journal:  Science       Date:  2013-04-04       Impact factor: 47.728

6.  Optical control demonstrates switch-like PIP3 dynamics underlying the initiation of immune cell migration.

Authors:  W K Ajith Karunarathne; Lopamudra Giri; Anilkumar K Patel; Kareenhalli V Venkatesh; N Gautam
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-08       Impact factor: 11.205

7.  Optical control of protein activity by fluorescent protein domains.

Authors:  Xin X Zhou; Hokyung K Chung; Amy J Lam; Michael Z Lin
Journal:  Science       Date:  2012-11-09       Impact factor: 47.728

8.  Multi-chromatic control of mammalian gene expression and signaling.

Authors:  Konrad Müller; Raphael Engesser; Simon Schulz; Thorsten Steinberg; Pascal Tomakidi; Cornelia C Weber; Roman Ulm; Jens Timmer; Matias D Zurbriggen; Wilfried Weber
Journal:  Nucleic Acids Res       Date:  2013-04-26       Impact factor: 16.971

9.  A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells.

Authors:  Konrad Müller; Raphael Engesser; Stéphanie Metzger; Simon Schulz; Michael M Kämpf; Moritz Busacker; Thorsten Steinberg; Pascal Tomakidi; Martin Ehrbar; Ferenc Nagy; Jens Timmer; Matias D Zubriggen; Wilfried Weber
Journal:  Nucleic Acids Res       Date:  2013-01-25       Impact factor: 16.971

10.  A light-triggered protein secretion system.

Authors:  Daniel Chen; Emily S Gibson; Matthew J Kennedy
Journal:  J Cell Biol       Date:  2013-05-13       Impact factor: 10.539

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  38 in total

1.  Seeing Past Cellular Adaptation.

Authors:  Stephanie L Gupton; Melanie Barzik
Journal:  Cell Syst       Date:  2015-07-29       Impact factor: 10.304

Review 2.  Optochemical Control of Biological Processes in Cells and Animals.

Authors:  Nicholas Ankenbruck; Taylor Courtney; Yuta Naro; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-01       Impact factor: 15.336

3.  Engineering extrinsic disorder to control protein activity in living cells.

Authors:  Onur Dagliyan; Miroslaw Tarnawski; Pei-Hsuan Chu; David Shirvanyants; Ilme Schlichting; Nikolay V Dokholyan; Klaus M Hahn
Journal:  Science       Date:  2016-12-16       Impact factor: 47.728

Review 4.  Cellular Biophysics.

Authors:  Rick Horwitz
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

5.  SCHEEPDOG: Programming Electric Cues to Dynamically Herd Large-Scale Cell Migration.

Authors:  Tom J Zajdel; Gawoon Shim; Linus Wang; Alejandro Rossello-Martinez; Daniel J Cohen
Journal:  Cell Syst       Date:  2020-06-24       Impact factor: 10.304

6.  Phototriggered Secretion of Membrane Compartmentalized Bioactive Agents.

Authors:  Robert M Hughes; Christina M Marvin; Zachary L Rodgers; Song Ding; Nathan P Oien; Weston J Smith; David S Lawrence
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-22       Impact factor: 15.336

Review 7.  Controlling protein conformation with light.

Authors:  Onur Dagliyan; Klaus M Hahn
Journal:  Curr Opin Struct Biol       Date:  2019-03-05       Impact factor: 6.809

Review 8.  Recent advances in the optical control of protein function through genetic code expansion.

Authors:  Taylor Courtney; Alexander Deiters
Journal:  Curr Opin Chem Biol       Date:  2018-07-26       Impact factor: 8.822

9.  Flash-and-Freeze: A Novel Technique to Capture Membrane Dynamics with Electron Microscopy.

Authors:  Shuo Li; Sumana Raychaudhuri; Shigeki Watanabe
Journal:  J Vis Exp       Date:  2017-05-01       Impact factor: 1.355

10.  Optogenetic interrogation of integrin αVβ3 function in endothelial cells.

Authors:  Zhongji Liao; Ana Kasirer-Friede; Sanford J Shattil
Journal:  J Cell Sci       Date:  2017-09-01       Impact factor: 5.285

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