Literature DB >> 30849716

Controlling protein conformation with light.

Onur Dagliyan1, Klaus M Hahn2.   

Abstract

Optogenetics, genetically encoded engineering of proteins to respond to light, has enabled precise control of the timing and localization of protein activity in live cells and for specific cell types in animals. Light-sensitive ion channels have become well established tools in neurobiology, and a host of new methods have recently enabled the control of other diverse protein structures as well. This review focuses on approaches to switch proteins between physiologically relevant, naturally occurring conformations using light, accomplished by incorporating light-responsive engineered domains that sterically and allosterically control the active site.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Year:  2019        PMID: 30849716      PMCID: PMC6697613          DOI: 10.1016/j.sbi.2019.01.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  35 in total

Review 1.  Autoinhibitory domains: modular effectors of cellular regulation.

Authors:  Miles A Pufall; Barbara J Graves
Journal:  Annu Rev Cell Dev Biol       Date:  2002-04-02       Impact factor: 13.827

Review 2.  Allostery without a conformational change? Revisiting the paradigm.

Authors:  Ruth Nussinov; Chung-Jung Tsai
Journal:  Curr Opin Struct Biol       Date:  2014-12-11       Impact factor: 6.809

3.  Engineered anti-CRISPR proteins for optogenetic control of CRISPR-Cas9.

Authors:  Felix Bubeck; Mareike D Hoffmann; Zander Harteveld; Sabine Aschenbrenner; Andreas Bietz; Max C Waldhauer; Kathleen Börner; Julia Fakhiri; Carolin Schmelas; Laura Dietz; Dirk Grimm; Bruno E Correia; Roland Eils; Dominik Niopek
Journal:  Nat Methods       Date:  2018-10-30       Impact factor: 28.547

Review 4.  Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function.

Authors:  Ursula Jakob; Richard Kriwacki; Vladimir N Uversky
Journal:  Chem Rev       Date:  2014-02-06       Impact factor: 60.622

Review 5.  Engineering genetically-encoded tools for optogenetic control of protein activity.

Authors:  Qi Liu; Chandra L Tucker
Journal:  Curr Opin Chem Biol       Date:  2017-05-17       Impact factor: 8.822

6.  Light-mediated activation reveals a key role for Rac in collective guidance of cell movement in vivo.

Authors:  Xiaobo Wang; Li He; Yi I Wu; Klaus M Hahn; Denise J Montell
Journal:  Nat Cell Biol       Date:  2010-05-16       Impact factor: 28.824

7.  Engineered allosteric activation of kinases in living cells.

Authors:  Andrei V Karginov; Feng Ding; Pradeep Kota; Nikolay V Dokholyan; Klaus M Hahn
Journal:  Nat Biotechnol       Date:  2010-06-27       Impact factor: 54.908

8.  Estimation of the available free energy in a LOV2-J alpha photoswitch.

Authors:  Xiaolan Yao; Michael K Rosen; Kevin H Gardner
Journal:  Nat Chem Biol       Date:  2008-07-06       Impact factor: 15.040

9.  Rac1 is essential in cocaine-induced structural plasticity of nucleus accumbens neurons.

Authors:  David M Dietz; Haosheng Sun; Mary Kay Lobo; Michael E Cahill; Benjamin Chadwick; Virginia Gao; Ja Wook Koo; Michelle S Mazei-Robison; Caroline Dias; Ian Maze; Diane Damez-Werno; Karen C Dietz; Kimberly N Scobie; Deveroux Ferguson; Daniel Christoffel; Yoko Ohnishi; Georgia E Hodes; Yi Zheng; Rachael L Neve; Klaus M Hahn; Scott J Russo; Eric J Nestler
Journal:  Nat Neurosci       Date:  2012-06       Impact factor: 24.884

10.  Dissecting motility signaling through activation of specific Src-effector complexes.

Authors:  Andrei V Karginov; Denis Tsygankov; Matthew Berginski; Pei-Hsuan Chu; Evan D Trudeau; Jason J Yi; Shawn Gomez; Timothy C Elston; Klaus M Hahn
Journal:  Nat Chem Biol       Date:  2014-03-09       Impact factor: 15.040

View more
  8 in total

1.  A Single Protein Disruption Site Results in Efficient Reassembly by Multiple Engineering Methods.

Authors:  Jeung-Hoi Ha; Maria F Presti; Stewart N Loh
Journal:  Biophys J       Date:  2019-06-07       Impact factor: 4.033

2.  An 'on' switch for proteins.

Authors:  Klaus Michael Hahn
Journal:  Nature       Date:  2019-05       Impact factor: 49.962

3.  Repurposing Protein Degradation for Optogenetic Modulation of Protein Activities.

Authors:  Payel Mondal; Vishnu V Krishnamurthy; Savanna R Sharum; Neeka Haack; Huiwen Zhou; Jennifer Cheng; Jing Yang; Kai Zhang
Journal:  ACS Synth Biol       Date:  2019-10-21       Impact factor: 5.110

Review 4.  Optophysiology: Illuminating cell physiology with optogenetics.

Authors:  Peng Tan; Lian He; Yun Huang; Yubin Zhou
Journal:  Physiol Rev       Date:  2022-01-24       Impact factor: 37.312

Review 5.  Molecular Biology of Microbial Rhodopsins.

Authors:  Martin Engelhard
Journal:  Methods Mol Biol       Date:  2022

6.  Engineering a switchable single-chain TEV protease to control protein maturation in living neurons.

Authors:  Pietro Renna; Cristian Ripoli; Onur Dagliyan; Francesco Pastore; Marco Rinaudo; Agnese Re; Fabiola Paciello; Claudio Grassi
Journal:  Bioeng Transl Med       Date:  2022-02-22

7.  Optical control of ERK and AKT signaling promotes axon regeneration and functional recovery of PNS and CNS in Drosophila.

Authors:  Qin Wang; Huaxun Fan; Feng Li; Savanna S Skeeters; Vishnu V Krishnamurthy; Yuanquan Song; Kai Zhang
Journal:  Elife       Date:  2020-10-06       Impact factor: 8.140

8.  Light-driven release of cucurbit[8]uril from a bivalent cage.

Authors:  Pim J de Vink; Tim van der Hek; Luc Brunsveld
Journal:  Chem Sci       Date:  2021-04-12       Impact factor: 9.825

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.