Literature DB >> 28521066

Optochemical Control of Biological Processes in Cells and Animals.

Nicholas Ankenbruck1, Taylor Courtney1, Yuta Naro1, Alexander Deiters1.   

Abstract

Biological processes are naturally regulated with high spatial and temporal control, as is perhaps most evident in metazoan embryogenesis. Chemical tools have been extensively utilized in cell and developmental biology to investigate cellular processes, and conditional control methods have expanded applications of these technologies toward resolving complex biological questions. Light represents an excellent external trigger since it can be controlled with very high spatial and temporal precision. To this end, several optically regulated tools have been developed and applied to living systems. In this review we discuss recent developments of optochemical tools, including small molecules, peptides, proteins, and nucleic acids that can be irreversibly or reversibly controlled through light irradiation, with a focus on applications in cells and animals.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  caged compounds; chemical biology; optochemical tools; photochemistry; photoswitches

Mesh:

Substances:

Year:  2018        PMID: 28521066      PMCID: PMC6026863          DOI: 10.1002/anie.201700171

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  324 in total

1.  Light controllable siRNAs regulate gene suppression and phenotypes in cells.

Authors:  Quan N Nguyen; Rajesh V Chavli; Joao T Marques; Peter G Conrad; Die Wang; Weihai He; Barbara E Belisle; Aiguo Zhang; Larry M Pastor; Frank R Witney; May Morris; Frederic Heitz; Gilles Divita; Bryan R G Williams; Gary K McMaster
Journal:  Biochim Biophys Acta       Date:  2006-01-30

Review 2.  Controlling morpholino experiments: don't stop making antisense.

Authors:  Judith S Eisen; James C Smith
Journal:  Development       Date:  2008-04-09       Impact factor: 6.868

3.  Proteasome inhibitors with photocontrolled activity.

Authors:  Mickel J Hansen; Willem A Velema; Gerjan de Bruin; Herman S Overkleeft; Wiktor Szymanski; Ben L Feringa
Journal:  Chembiochem       Date:  2014-08-14       Impact factor: 3.164

4.  RNA interference controlled by light of variable wavelength.

Authors:  Andreas Meyer; Andriy Mokhir
Journal:  Angew Chem Int Ed Engl       Date:  2014-09-22       Impact factor: 15.336

5.  Improving site-directed RNA editing in vitro and in cell culture by chemical modification of the guideRNA.

Authors:  Paul Vogel; Marius F Schneider; Jacqueline Wettengel; Thorsten Stafforst
Journal:  Angew Chem Int Ed Engl       Date:  2014-05-28       Impact factor: 15.336

6.  Light control of cellular processes by using photocaged abscisic acid.

Authors:  Catherine W Wright; Zhi-Fo Guo; Fu-Sen Liang
Journal:  Chembiochem       Date:  2014-12-21       Impact factor: 3.164

7.  A caged substrate peptide for matrix metalloproteinases.

Authors:  Elena Decaneto; Stefania Abbruzzetti; Inge Heise; Wolfgang Lubitz; Cristiano Viappiani; Markus Knipp
Journal:  Photochem Photobiol Sci       Date:  2015-02       Impact factor: 3.982

8.  Induction of in vitro tumor cell invasion of cellular monolayers by lysophosphatidic acid or phospholipase D.

Authors:  F Imamura; T Horai; M Mukai; K Shinkai; M Sawada; H Akedo
Journal:  Biochem Biophys Res Commun       Date:  1993-06-15       Impact factor: 3.575

9.  Postsynthetic Modification of DNA Phosphodiester Backbone for Photocaged DNAzyme.

Authors:  Xiaoyan Wang; Mengli Feng; Lu Xiao; Aijun Tong; Yu Xiang
Journal:  ACS Chem Biol       Date:  2015-12-16       Impact factor: 5.100

10.  Light-inducible spatiotemporal control of gene activation by customizable zinc finger transcription factors.

Authors:  Lauren R Polstein; Charles A Gersbach
Journal:  J Am Chem Soc       Date:  2012-09-27       Impact factor: 15.419

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  73 in total

Review 1.  Development of photolabile protecting groups and their application to the optochemical control of cell signaling.

Authors:  Anirban Bardhan; Alexander Deiters
Journal:  Curr Opin Struct Biol       Date:  2019-05-25       Impact factor: 6.809

2.  Cell-Lineage Tracing in Zebrafish Embryos with an Expanded Genetic Code.

Authors:  Wes Brown; Jihe Liu; Michael Tsang; Alexander Deiters
Journal:  Chembiochem       Date:  2018-05-18       Impact factor: 3.164

3.  Controlling the Oligomerization State of Aβ-Derived Peptides with Light.

Authors:  Patrick J Salveson; Sepehr Haerianardakani; Alexander Thuy-Boun; Adam G Kreutzer; James S Nowick
Journal:  J Am Chem Soc       Date:  2018-04-20       Impact factor: 15.419

4.  Spatiotemporal Control of CRISPR/Cas9 Function in Cells and Zebrafish using Light-Activated Guide RNA.

Authors:  Wenyuan Zhou; Wes Brown; Anirban Bardhan; Michael Delaney; Amber S Ilk; Randy R Rauen; Shoeb I Kahn; Michael Tsang; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-06       Impact factor: 15.336

Review 5.  Optically inducible membrane recruitment and signaling systems.

Authors:  Pimkhuan Hannanta-Anan; Spencer T Glantz; Brian Y Chow
Journal:  Curr Opin Struct Biol       Date:  2019-03-16       Impact factor: 6.809

6.  A Singular System with Precise Dosing and Spatiotemporal Control of CRISPR-Cas9.

Authors:  Debasish Manna; Basudeb Maji; Soumyashree A Gangopadhyay; Kurt J Cox; Qingxuan Zhou; Benjamin K Law; Ralph Mazitschek; Amit Choudhary
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-02       Impact factor: 15.336

7.  Optical Control of Small Molecule-Induced Protein Degradation.

Authors:  Yuta Naro; Kristie Darrah; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2020-01-23       Impact factor: 15.419

8.  Reversible and Tunable Photoswitching of Protein Function through Genetic Encoding of Azobenzene Amino Acids in Mammalian Cells.

Authors:  Ji Luo; Subhas Samanta; Marino Convertino; Nikolay V Dokholyan; Alexander Deiters
Journal:  Chembiochem       Date:  2018-10-02       Impact factor: 3.164

9.  Light-activation of Cre recombinase in zebrafish embryos through genetic code expansion.

Authors:  Wes Brown; Alexander Deiters
Journal:  Methods Enzymol       Date:  2019-04-30       Impact factor: 1.600

10.  A Cyanine Photooxidation/β-Elimination Sequence Enables Near-infrared Uncaging of Aryl Amine Payloads.

Authors:  Tsuyoshi Yamamoto; Donald R Caldwell; Albert Gandioso; Martin J Schnermann
Journal:  Photochem Photobiol       Date:  2019-03-19       Impact factor: 3.421

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