Literature DB >> 30056281

Recent advances in the optical control of protein function through genetic code expansion.

Taylor Courtney1, Alexander Deiters2.   

Abstract

In nature, biological processes are regulated with precise spatial and temporal resolution at the molecular, cellular, and organismal levels. In order to perturb and manipulate these processes, optically controlled chemical tools have been developed and applied in living systems. The use of light as an external trigger provides spatial and temporal control with minimal adverse effects. Incorporation of light-responsive amino acids into proteins in cells and organisms with an expanded genetic code has enabled the precise activation/deactivation of numerous, diverse proteins, such as kinases, nucleases, proteases, and polymerases. Using unnatural amino acids to generate light-triggered proteins enables a rational engineering approach that is based on mechanistic and/or structural information. This review focuses on the most recent developments in the field, including technological advances and biological applications.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30056281      PMCID: PMC7083171          DOI: 10.1016/j.cbpa.2018.07.011

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  53 in total

1.  Optical Control of CRISPR/Cas9 Gene Editing.

Authors:  James Hemphill; Erin K Borchardt; Kalyn Brown; Aravind Asokan; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2015-04-23       Impact factor: 15.419

2.  Generation of a genetically encoded, photoactivatable intein for the controlled production of cyclic peptides.

Authors:  Jana K Böcker; Kristina Friedel; Julian C J Matern; Anne-Lena Bachmann; Henning D Mootz
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-30       Impact factor: 15.336

Review 3.  CRISPR-Cas9 Structures and Mechanisms.

Authors:  Fuguo Jiang; Jennifer A Doudna
Journal:  Annu Rev Biophys       Date:  2017-03-30       Impact factor: 12.981

4.  Reconstitution of selenocysteine incorporation reveals intrinsic regulation by SECIS elements.

Authors:  Nirupama Gupta; Louise W DeMong; Sowmya Banda; Paul R Copeland
Journal:  J Mol Biol       Date:  2013-04-23       Impact factor: 5.469

5.  Genetic Code Expansion in Zebrafish Embryos and Its Application to Optical Control of Cell Signaling.

Authors:  Jihe Liu; James Hemphill; Subhas Samanta; Michael Tsang; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2017-06-28       Impact factor: 15.419

6.  The incorporation of a photoisomerizable amino acid into proteins in E. coli.

Authors:  Mohua Bose; Dan Groff; Jianming Xie; Eric Brustad; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2006-01-18       Impact factor: 15.419

7.  Light activation of protein splicing with a photocaged fast intein.

Authors:  Wei Ren; Ao Ji; Hui-wang Ai
Journal:  J Am Chem Soc       Date:  2015-02-05       Impact factor: 15.419

8.  Optical Control of a Neuronal Protein Using a Genetically Encoded Unnatural Amino Acid in Neurons.

Authors:  Ji-Yong Kang; Daichi Kawaguchi; Lei Wang
Journal:  J Vis Exp       Date:  2016-03-28       Impact factor: 1.355

9.  Light-activated kinases enable temporal dissection of signaling networks in living cells.

Authors:  Arnaud Gautier; Alexander Deiters; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-01-27       Impact factor: 15.419

10.  Optocontrol of glutamate receptor activity by single side-chain photoisomerization.

Authors:  Viktoria Klippenstein; Christian Hoppmann; Shixin Ye; Lei Wang; Pierre Paoletti
Journal:  Elife       Date:  2017-05-23       Impact factor: 8.140

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  26 in total

Review 1.  Development of photolabile protecting groups and their application to the optochemical control of cell signaling.

Authors:  Anirban Bardhan; Alexander Deiters
Journal:  Curr Opin Struct Biol       Date:  2019-05-25       Impact factor: 6.809

Review 2.  Reprogramming the genetic code.

Authors:  Daniel de la Torre; Jason W Chin
Journal:  Nat Rev Genet       Date:  2020-12-14       Impact factor: 53.242

3.  Visible-to-NIR-Light Activated Release: From Small Molecules to Nanomaterials.

Authors:  Roy Weinstain; Tomáš Slanina; Dnyaneshwar Kand; Petr Klán
Journal:  Chem Rev       Date:  2020-10-30       Impact factor: 60.622

Review 4.  Genetic Code Expansion in Animals.

Authors:  Wes Brown; Jihe Liu; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2018-09-05       Impact factor: 5.100

5.  Genetically encoding photoswitchable click amino acids for general optical control of conformation and function of proteins.

Authors:  Christian Hoppmann; Lei Wang
Journal:  Methods Enzymol       Date:  2019-05-02       Impact factor: 1.600

6.  Light-activation of Cre recombinase in zebrafish embryos through genetic code expansion.

Authors:  Wes Brown; Alexander Deiters
Journal:  Methods Enzymol       Date:  2019-04-30       Impact factor: 1.600

7.  Light Regulation of Enzyme Allostery through Photo-responsive Unnatural Amino Acids.

Authors:  Andrea C Kneuttinger; Kristina Straub; Philipp Bittner; Nadja A Simeth; Astrid Bruckmann; Florian Busch; Chitra Rajendran; Enrico Hupfeld; Vicki H Wysocki; Dominik Horinek; Burkhard König; Rainer Merkl; Reinhard Sterner
Journal:  Cell Chem Biol       Date:  2019-09-05       Impact factor: 8.116

8.  Multiplexed Photoactivation of mRNA with Single-Cell Resolution.

Authors:  Dongyang Zhang; Shuaijiang Jin; Xijun Piao; Neal K Devaraj
Journal:  ACS Chem Biol       Date:  2020-06-12       Impact factor: 5.100

9.  Enzyme Allostery: Now Controllable by Light.

Authors:  Taylor M Courtney; Alexander Deiters
Journal:  Cell Chem Biol       Date:  2019-11-21       Impact factor: 8.116

10.  Optical control of MAP kinase kinase 6 (MKK6) reveals that it has divergent roles in pro-apoptotic and anti-proliferative signaling.

Authors:  Shah Md Toufiqur Rahman; Wenyuan Zhou; Alexander Deiters; Jason M Haugh
Journal:  J Biol Chem       Date:  2020-05-05       Impact factor: 5.157

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