Literature DB >> 27980211

Engineering extrinsic disorder to control protein activity in living cells.

Onur Dagliyan1,2,3, Miroslaw Tarnawski4, Pei-Hsuan Chu3, David Shirvanyants2, Ilme Schlichting4, Nikolay V Dokholyan5,2, Klaus M Hahn6.   

Abstract

Optogenetic and chemogenetic control of proteins has revealed otherwise inaccessible facets of signaling dynamics. Here, we use light- or ligand-sensitive domains to modulate the structural disorder of diverse proteins, thereby generating robust allosteric switches. Sensory domains were inserted into nonconserved, surface-exposed loops that were tight and identified computationally as allosterically coupled to active sites. Allosteric switches introduced into motility signaling proteins (kinases, guanosine triphosphatases, and guanine exchange factors) controlled conversion between conformations closely resembling natural active and inactive states, as well as modulated the morphodynamics of living cells. Our results illustrate a broadly applicable approach to design physiological protein switches.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 27980211      PMCID: PMC5362825          DOI: 10.1126/science.aah3404

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  29 in total

1.  Interpreting the folding kinetics of helical proteins.

Authors:  Y Zhou; M Karplus
Journal:  Nature       Date:  1999-09-23       Impact factor: 49.962

2.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

3.  Endogenous RhoG is rapidly activated after epidermal growth factor stimulation through multiple guanine-nucleotide exchange factors.

Authors:  Thomas Samson; Christopher Welch; Elizabeth Monaghan-Benson; Klaus M Hahn; Keith Burridge
Journal:  Mol Biol Cell       Date:  2010-03-17       Impact factor: 4.138

4.  Engineered allosteric activation of kinases in living cells.

Authors:  Andrei V Karginov; Feng Ding; Pradeep Kota; Nikolay V Dokholyan; Klaus M Hahn
Journal:  Nat Biotechnol       Date:  2010-06-27       Impact factor: 54.908

5.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

6.  Ab initio folding of proteins with all-atom discrete molecular dynamics.

Authors:  Feng Ding; Douglas Tsao; Huifen Nie; Nikolay V Dokholyan
Journal:  Structure       Date:  2008-07       Impact factor: 5.006

7.  Estimation of the available free energy in a LOV2-J alpha photoswitch.

Authors:  Xiaolan Yao; Michael K Rosen; Kevin H Gardner
Journal:  Nat Chem Biol       Date:  2008-07-06       Impact factor: 15.040

8.  Rapid blue-light-mediated induction of protein interactions in living cells.

Authors:  Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
Journal:  Nat Methods       Date:  2010-10-31       Impact factor: 28.547

9.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

10.  Engineering light-inducible nuclear localization signals for precise spatiotemporal control of protein dynamics in living cells.

Authors:  Dominik Niopek; Dirk Benzinger; Julia Roensch; Thomas Draebing; Pierre Wehler; Roland Eils; Barbara Di Ventura
Journal:  Nat Commun       Date:  2014-07-14       Impact factor: 14.919

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  68 in total

1.  Engineering allosteric regulation in protein kinases.

Authors:  David Pincus; Jai P Pandey; Zoë A Feder; Pau Creixell; Orna Resnekov; Kimberly A Reynolds
Journal:  Sci Signal       Date:  2018-11-06       Impact factor: 8.192

Review 2.  Optically inducible membrane recruitment and signaling systems.

Authors:  Pimkhuan Hannanta-Anan; Spencer T Glantz; Brian Y Chow
Journal:  Curr Opin Struct Biol       Date:  2019-03-16       Impact factor: 6.809

Review 3.  CRAC channel-based optogenetics.

Authors:  Nhung Thi Nguyen; Guolin Ma; Eena Lin; Brendan D'Souza; Ji Jing; Lian He; Yun Huang; Yubin Zhou
Journal:  Cell Calcium       Date:  2018-09-03       Impact factor: 6.817

4.  A Split-Abl Kinase for Direct Activation in Cells.

Authors:  Juan E Diaz; Charles W Morgan; Catherine E Minogue; Alexander S Hebert; Joshua J Coon; James A Wells
Journal:  Cell Chem Biol       Date:  2017-09-14       Impact factor: 8.116

5.  Rational design and implementation of a chemically inducible heterotrimerization system.

Authors:  Helen D Wu; Masaki Kikuchi; Onur Dagliyan; Adam K Aragaki; Hideki Nakamura; Nikolay V Dokholyan; Takashi Umehara; Takanari Inoue
Journal:  Nat Methods       Date:  2020-08-03       Impact factor: 28.547

Review 6.  Optogenetically controlled protein kinases for regulation of cellular signaling.

Authors:  Anna V Leopold; Konstantin G Chernov; Vladislav V Verkhusha
Journal:  Chem Soc Rev       Date:  2018-04-03       Impact factor: 54.564

Review 7.  Engineered control of enzyme structural dynamics and function.

Authors:  David D Boehr; Rebecca N D'Amico; Kathleen F O'Rourke
Journal:  Protein Sci       Date:  2018-02-16       Impact factor: 6.725

Review 8.  Controlling protein conformation with light.

Authors:  Onur Dagliyan; Klaus M Hahn
Journal:  Curr Opin Struct Biol       Date:  2019-03-05       Impact factor: 6.809

9.  Islet Amyloid Polypeptide Promotes Amyloid-Beta Aggregation by Binding-Induced Helix-Unfolding of the Amyloidogenic Core.

Authors:  Xinwei Ge; Ye Yang; Yunxiang Sun; Weiguo Cao; Feng Ding
Journal:  ACS Chem Neurosci       Date:  2018-02-09       Impact factor: 4.418

10.  Optogenetic Reconstitution for Determining the Form and Function of Membraneless Organelles.

Authors:  Elliot Dine; Jared E Toettcher
Journal:  Biochemistry       Date:  2018-01-26       Impact factor: 3.162

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