Literature DB >> 23417571

Guiding lights: recent developments in optogenetic control of biochemical signals.

Taofei Yin1, Yi I Wu.   

Abstract

Optogenetics arises from the innovative application of microbial opsins in mammalian neurons and has since been a powerful technology that fuels the advance of our knowledge in neuroscience. In recent years, there has been growing interest in designing optogenetic tools extendable to broader cell types and biochemical signals. To date, a variety of photoactivatable proteins (refers to induction of protein activity in contrast to fluorescence) have been developed based on the understanding of plant and microbial photoreceptors including phototropins, blue light sensors using flavin adenine dinucleotide proteins, cryptochromes, and phytochromes. Such tools offered researchers reversible, quantitative, and precise spatiotemporal control of enzymatic activity, protein-protein interaction, protein translocation, as well as gene transcription in cells and in whole animals. In this review, we will briefly introduce these photosensory proteins, describe recent developments in optogenetics, and compare and contrast different methods based on their advantages and limitations.

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Year:  2013        PMID: 23417571     DOI: 10.1007/s00424-013-1244-x

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  68 in total

1.  Direct interaction of Arabidopsis cryptochromes with COP1 in light control development.

Authors:  H Wang; L G Ma; J M Li; H Y Zhao; X W Deng
Journal:  Science       Date:  2001-08-16       Impact factor: 47.728

2.  The LOV domain family: photoresponsive signaling modules coupled to diverse output domains.

Authors:  Sean Crosson; Sudarshan Rajagopal; Keith Moffat
Journal:  Biochemistry       Date:  2003-01-14       Impact factor: 3.162

3.  A photoswitchable DNA-binding protein based on a truncated GCN4-photoactive yellow protein chimera.

Authors:  Stacy-Anne Morgan; G Andrew Woolley
Journal:  Photochem Photobiol Sci       Date:  2010-09-13       Impact factor: 3.982

4.  Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin.

Authors:  Xiang Li; Davina V Gutierrez; M Gartz Hanson; Jing Han; Melanie D Mark; Hillel Chiel; Peter Hegemann; Lynn T Landmesser; Stefan Herlitze
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-23       Impact factor: 11.205

5.  Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses.

Authors:  Georg Nagel; Martin Brauner; Jana F Liewald; Nona Adeishvili; Ernst Bamberg; Alexander Gottschalk
Journal:  Curr Biol       Date:  2005-12-20       Impact factor: 10.834

6.  Engineering a photoactivated caspase-7 for rapid induction of apoptosis.

Authors:  Evan Mills; Xi Chen; Elizabeth Pham; Stanley Wong; Kevin Truong
Journal:  ACS Synth Biol       Date:  2011-11-04       Impact factor: 5.110

7.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

8.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

9.  Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.

Authors:  Thomas R M Barends; Elisabeth Hartmann; Julia J Griese; Thorsten Beitlich; Natalia V Kirienko; Dmitri A Ryjenkov; Jochen Reinstein; Robert L Shoeman; Mark Gomelsky; Ilme Schlichting
Journal:  Nature       Date:  2009-06-18       Impact factor: 49.962

10.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

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  9 in total

1.  Optogenetic engineering: light-directed cell motility.

Authors:  Robert M Hughes; David S Lawrence
Journal:  Angew Chem Int Ed Engl       Date:  2014-08-25       Impact factor: 15.336

Review 2.  Subcellular optogenetics - controlling signaling and single-cell behavior.

Authors:  W K Ajith Karunarathne; Patrick R O'Neill; Narasimhan Gautam
Journal:  J Cell Sci       Date:  2014-11-28       Impact factor: 5.285

Review 3.  Optobiology: optical control of biological processes via protein engineering.

Authors:  Benjamin Kim; Michael Z Lin
Journal:  Biochem Soc Trans       Date:  2013-10       Impact factor: 5.407

Review 4.  Optogenetic approaches to cell migration and beyond.

Authors:  Matthew Weitzman; Klaus M Hahn
Journal:  Curr Opin Cell Biol       Date:  2014-09-15       Impact factor: 8.382

5.  Optogenetic apoptosis: light-triggered cell death.

Authors:  Robert M Hughes; David J Freeman; Kelsey N Lamb; Rebecca M Pollet; Weston J Smith; David S Lawrence
Journal:  Angew Chem Int Ed Engl       Date:  2015-08-25       Impact factor: 15.336

6.  Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase.

Authors:  Colin P O'Banion; Melanie A Priestman; Robert M Hughes; Laura E Herring; Stephen J Capuzzi; David S Lawrence
Journal:  Cell Chem Biol       Date:  2017-11-05       Impact factor: 8.116

Review 7.  Photochemistry of flavoprotein light sensors.

Authors:  Karen S Conrad; Craig C Manahan; Brian R Crane
Journal:  Nat Chem Biol       Date:  2014-10       Impact factor: 15.040

8.  Manipulation of endogenous kinase activity in living cells using photoswitchable inhibitory peptides.

Authors:  Jason J Yi; Hui Wang; Marco Vilela; Gaudenz Danuser; Klaus M Hahn
Journal:  ACS Synth Biol       Date:  2014-06-13       Impact factor: 5.110

9.  Photocontrolled reversible self-assembly of dodecamer nitrilase.

Authors:  Qiao Yu; Yong Wang; Shengyun Zhao; Yuhong Ren
Journal:  Bioresour Bioprocess       Date:  2017-08-04
  9 in total

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