Literature DB >> 25077610

Development of a database for translational spinal cord injury research.

Jessica L Nielson1, Cristian F Guandique, Aiwen W Liu, Darlene A Burke, A Todd Lash, Rod Moseanko, Stephanie Hawbecker, Sarah C Strand, Sharon Zdunowski, Karen-Amanda Irvine, John H Brock, Yvette S Nout-Lomas, John C Gensel, Kim D Anderson, Mark R Segal, Ephron S Rosenzweig, David S K Magnuson, Scott R Whittemore, Dana M McTigue, Phillip G Popovich, Alexander G Rabchevsky, Stephen W Scheff, Oswald Steward, Grégoire Courtine, V Reggie Edgerton, Mark H Tuszynski, Michael S Beattie, Jacqueline C Bresnahan, Adam R Ferguson.   

Abstract

Efforts to understand spinal cord injury (SCI) and other complex neurotrauma disorders at the pre-clinical level have shown progress in recent years. However, successful translation of basic research into clinical practice has been slow, partly because of the large, heterogeneous data sets involved. In this sense, translational neurological research represents a "big data" problem. In an effort to expedite translation of pre-clinical knowledge into standards of patient care for SCI, we describe the development of a novel database for translational neurotrauma research known as Visualized Syndromic Information and Outcomes for Neurotrauma-SCI (VISION-SCI). We present demographics, descriptive statistics, and translational syndromic outcomes derived from our ongoing efforts to build a multi-center, multi-species pre-clinical database for SCI models. We leveraged archived surgical records, postoperative care logs, behavioral outcome measures, and histopathology from approximately 3000 mice, rats, and monkeys from pre-clinical SCI studies published between 1993 and 2013. The majority of animals in the database have measures collected for health monitoring, such as weight loss/gain, heart rate, blood pressure, postoperative monitoring of bladder function and drug/fluid administration, behavioral outcome measures of locomotion, and tissue sparing postmortem. Attempts to align these variables with currently accepted common data elements highlighted the need for more translational outcomes to be identified as clinical endpoints for therapeutic testing. Last, we use syndromic analysis to identify conserved biological mechanisms of recovery after cervical SCI between rats and monkeys that will allow for more-efficient testing of therapeutics that will need to be translated toward future clinical trials.

Entities:  

Keywords:  bioinformatics; monkeys; rodents; syndromics; translation

Mesh:

Year:  2014        PMID: 25077610      PMCID: PMC4186058          DOI: 10.1089/neu.2014.3399

Source DB:  PubMed          Journal:  J Neurotrauma        ISSN: 0897-7151            Impact factor:   5.269


  29 in total

1.  Replication and reproducibility in spinal cord injury research.

Authors:  Oswald Steward; Phillip G Popovich; W Dalton Dietrich; Naomi Kleitman
Journal:  Exp Neurol       Date:  2011-11-10       Impact factor: 5.330

Review 2.  Neuroprotection for traumatic brain injury: translational challenges and emerging therapeutic strategies.

Authors:  David J Loane; Alan I Faden
Journal:  Trends Pharmacol Sci       Date:  2010-10-29       Impact factor: 14.819

3.  Walking index for spinal cord injury (WISCI): an international multicenter validity and reliability study.

Authors:  J F Ditunno; P L Ditunno; V Graziani; G Scivoletto; M Bernardi; V Castellano; M Marchetti; H Barbeau; H L Frankel; J M D'Andrea Greve; H Y Ko; R Marshall; P Nance
Journal:  Spinal Cord       Date:  2000-04       Impact factor: 2.772

4.  Objective clinical assessment of motor function after experimental spinal cord injury in the rat.

Authors:  A S Rivlin; C H Tator
Journal:  J Neurosurg       Date:  1977-10       Impact factor: 5.115

5.  SCIM--spinal cord independence measure: a new disability scale for patients with spinal cord lesions.

Authors:  A Catz; M Itzkovich; E Agranov; H Ring; A Tamir
Journal:  Spinal Cord       Date:  1997-12       Impact factor: 2.772

6.  Basso Mouse Scale for locomotion detects differences in recovery after spinal cord injury in five common mouse strains.

Authors:  D Michele Basso; Lesley C Fisher; Aileen J Anderson; Lyn B Jakeman; Dana M McTigue; Phillip G Popovich
Journal:  J Neurotrauma       Date:  2006-05       Impact factor: 5.269

7.  The Graded Redefined Assessment of Strength Sensibility and Prehension: reliability and validity.

Authors:  Sukhvinder Kalsi-Ryan; Dorcas Beaton; Armin Curt; Susan Duff; Milos R Popovic; Claudia Rudhe; Michael G Fehlings; Mary C Verrier
Journal:  J Neurotrauma       Date:  2011-08-12       Impact factor: 5.269

8.  Spinal cord contusion in the rat: production of graded, reproducible, injury groups.

Authors:  J R Wrathall; R K Pettegrew; F Harvey
Journal:  Exp Neurol       Date:  1985-04       Impact factor: 5.330

9.  Minimum information about a spinal cord injury experiment: a proposed reporting standard for spinal cord injury experiments.

Authors:  Vance P Lemmon; Adam R Ferguson; Phillip G Popovich; Xiao-Ming Xu; Diane M Snow; Michihiro Igarashi; Christine E Beattie; John L Bixby
Journal:  J Neurotrauma       Date:  2014-07-11       Impact factor: 5.269

10.  Syndromics: a bioinformatics approach for neurotrauma research.

Authors:  Adam R Ferguson; Ellen D Stück; Jessica L Nielson
Journal:  Transl Stroke Res       Date:  2011-11-18       Impact factor: 6.829

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  28 in total

Review 1.  Long-Term Consequences of Traumatic Brain Injury: Current Status of Potential Mechanisms of Injury and Neurological Outcomes.

Authors:  Helen M Bramlett; W Dalton Dietrich
Journal:  J Neurotrauma       Date:  2014-12-19       Impact factor: 5.269

Review 2.  Translational Stroke Research: Vision and Opportunities.

Authors:  Francesca Bosetti; James I Koenig; Cenk Ayata; Stephen A Back; Kyra Becker; Joseph P Broderick; S Thomas Carmichael; Sunghee Cho; Marilyn J Cipolla; Dale Corbett; Roderick A Corriveau; Steven C Cramer; Adam R Ferguson; Seth P Finklestein; Byron D Ford; Karen L Furie; Thomas M Hemmen; Costantino Iadecola; Lyn B Jakeman; Scott Janis; Edward C Jauch; Karen C Johnston; Patrick M Kochanek; Harold Kohn; Eng H Lo; Patrick D Lyden; Carina Mallard; Louise D McCullough; Linda M McGavern; James F Meschia; Claudia S Moy; Miguel A Perez-Pinzon; Ipolia Ramadan; Sean I Savitz; Lee H Schwamm; Gary K Steinberg; Mary P Stenzel-Poore; Michael Tymianski; Steven Warach; Lawrence R Wechsler; John H Zhang; Walter Koroshetz
Journal:  Stroke       Date:  2017-07-27       Impact factor: 7.914

Review 3.  Big data from small data: data-sharing in the 'long tail' of neuroscience.

Authors:  Adam R Ferguson; Jessica L Nielson; Melissa H Cragin; Anita E Bandrowski; Maryann E Martone
Journal:  Nat Neurosci       Date:  2014-11       Impact factor: 24.884

4.  Dark data see the light.

Authors:  Ellen P Neff
Journal:  Lab Anim (NY)       Date:  2018-01-31       Impact factor: 12.625

5.  A brief period of moderate noxious stimulation induces hemorrhage and impairs locomotor recovery after spinal cord injury.

Authors:  Misty M Strain; Michelle A Hook; Joshua D Reynolds; Yung-Jen Huang; Melissa K Henwood; James W Grau
Journal:  Physiol Behav       Date:  2019-10-21

6.  FAIR SCI Ahead: The Evolution of the Open Data Commons for Pre-Clinical Spinal Cord Injury Research.

Authors:  Karim Fouad; John L Bixby; Alison Callahan; Jeffrey S Grethe; Lyn B Jakeman; Vance P Lemmon; David S K Magnuson; Maryann E Martone; Jessica L Nielson; Jan M Schwab; Carol Taylor-Burds; Wolfram Tetzlaff; Abel Torres-Espin; Adam R Ferguson
Journal:  J Neurotrauma       Date:  2019-12-06       Impact factor: 5.269

Review 7.  Leveraging biomedical informatics for assessing plasticity and repair in primate spinal cord injury.

Authors:  Jessica L Nielson; Jenny Haefeli; Ernesto A Salegio; Aiwen W Liu; Cristian F Guandique; Ellen D Stück; Stephanie Hawbecker; Rod Moseanko; Sarah C Strand; Sharon Zdunowski; John H Brock; Roland R Roy; Ephron S Rosenzweig; Yvette S Nout-Lomas; Gregoire Courtine; Leif A Havton; Oswald Steward; V Reggie Edgerton; Mark H Tuszynski; Michael S Beattie; Jacqueline C Bresnahan; Adam R Ferguson
Journal:  Brain Res       Date:  2014-11-04       Impact factor: 3.252

8.  Data Dissemination: Shortening the Long Tail of Traumatic Brain Injury Dark Data.

Authors:  Bridget E Hawkins; J Russell Huie; Carlos Almeida; Jiapei Chen; Adam R Ferguson
Journal:  J Neurotrauma       Date:  2019-03-29       Impact factor: 5.269

Review 9.  Behavioral testing in animal models of spinal cord injury.

Authors:  K Fouad; C Ng; D M Basso
Journal:  Exp Neurol       Date:  2020-07-28       Impact factor: 5.330

10.  Effect of kidney-reinforcing and marrow-beneficial Chinese medicine on bone metabolism-related factors following spinal cord injury in rats.

Authors:  DA-An Zhou; Yue Ning Deng; Lei Liu; Jian Jun Li
Journal:  Exp Ther Med       Date:  2016-04-27       Impact factor: 2.447

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