Literature DB >> 25349910

Big data from small data: data-sharing in the 'long tail' of neuroscience.

Adam R Ferguson1, Jessica L Nielson1, Melissa H Cragin2, Anita E Bandrowski3, Maryann E Martone4.   

Abstract

The launch of the US BRAIN and European Human Brain Projects coincides with growing international efforts toward transparency and increased access to publicly funded research in the neurosciences. The need for data-sharing standards and neuroinformatics infrastructure is more pressing than ever. However, 'big science' efforts are not the only drivers of data-sharing needs, as neuroscientists across the full spectrum of research grapple with the overwhelming volume of data being generated daily and a scientific environment that is increasingly focused on collaboration. In this commentary, we consider the issue of sharing of the richly diverse and heterogeneous small data sets produced by individual neuroscientists, so-called long-tail data. We consider the utility of these data, the diversity of repositories and options available for sharing such data, and emerging best practices. We provide use cases in which aggregating and mining diverse long-tail data convert numerous small data sources into big data for improved knowledge about neuroscience-related disorders.

Entities:  

Mesh:

Year:  2014        PMID: 25349910      PMCID: PMC4728080          DOI: 10.1038/nn.3838

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  51 in total

1.  The Human Brain Project: an international resource.

Authors:  M F Huerta; S H Koslow; A I Leshner
Journal:  Trends Neurosci       Date:  1993-11       Impact factor: 13.837

2.  Development of a database for translational spinal cord injury research.

Authors:  Jessica L Nielson; Cristian F Guandique; Aiwen W Liu; Darlene A Burke; A Todd Lash; Rod Moseanko; Stephanie Hawbecker; Sarah C Strand; Sharon Zdunowski; Karen-Amanda Irvine; John H Brock; Yvette S Nout-Lomas; John C Gensel; Kim D Anderson; Mark R Segal; Ephron S Rosenzweig; David S K Magnuson; Scott R Whittemore; Dana M McTigue; Phillip G Popovich; Alexander G Rabchevsky; Stephen W Scheff; Oswald Steward; Grégoire Courtine; V Reggie Edgerton; Mark H Tuszynski; Michael S Beattie; Jacqueline C Bresnahan; Adam R Ferguson
Journal:  J Neurotrauma       Date:  2014-07-31       Impact factor: 5.269

Review 3.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

4.  Transforming research and clinical knowledge in traumatic brain injury pilot: multicenter implementation of the common data elements for traumatic brain injury.

Authors:  John K Yue; Mary J Vassar; Hester F Lingsma; Shelly R Cooper; David O Okonkwo; Alex B Valadka; Wayne A Gordon; Andrew I R Maas; Pratik Mukherjee; Esther L Yuh; Ava M Puccio; David M Schnyer; Geoffrey T Manley
Journal:  J Neurotrauma       Date:  2013-09-24       Impact factor: 5.269

5.  Minimum information about a spinal cord injury experiment: a proposed reporting standard for spinal cord injury experiments.

Authors:  Vance P Lemmon; Adam R Ferguson; Phillip G Popovich; Xiao-Ming Xu; Diane M Snow; Michihiro Igarashi; Christine E Beattie; John L Bixby
Journal:  J Neurotrauma       Date:  2014-07-11       Impact factor: 5.269

6.  A test-retest fMRI dataset for motor, language and spatial attention functions.

Authors:  Krzysztof J Gorgolewski; Amos Storkey; Mark E Bastin; Ian R Whittle; Joanna M Wardlaw; Cyril R Pernet
Journal:  Gigascience       Date:  2013-04-29       Impact factor: 6.524

7.  Willingness to share research data is related to the strength of the evidence and the quality of reporting of statistical results.

Authors:  Jelte M Wicherts; Marjan Bakker; Dylan Molenaar
Journal:  PLoS One       Date:  2011-11-02       Impact factor: 3.240

8.  Digital atlases as a framework for data sharing.

Authors:  Jyl Boline; Erh-Fang Lee; Arthur W Toga
Journal:  Front Neurosci       Date:  2008-07-14       Impact factor: 4.677

9.  Predicting outcome after traumatic brain injury: development and international validation of prognostic scores based on admission characteristics.

Authors:  Ewout W Steyerberg; Nino Mushkudiani; Pablo Perel; Isabella Butcher; Juan Lu; Gillian S McHugh; Gordon D Murray; Anthony Marmarou; Ian Roberts; J Dik F Habbema; Andrew I R Maas
Journal:  PLoS Med       Date:  2008-08-05       Impact factor: 11.069

10.  Troubleshooting public data archiving: suggestions to increase participation.

Authors:  Dominique G Roche; Robert Lanfear; Sandra A Binning; Tonya M Haff; Lisa E Schwanz; Kristal E Cain; Hanna Kokko; Michael D Jennions; Loeske E B Kruuk
Journal:  PLoS Biol       Date:  2014-01-28       Impact factor: 8.029

View more
  63 in total

Review 1.  Annual Research Review: Discovery science strategies in studies of the pathophysiology of child and adolescent psychiatric disorders--promises and limitations.

Authors:  Yihong Zhao; F Xavier Castellanos
Journal:  J Child Psychol Psychiatry       Date:  2016-01-06       Impact factor: 8.982

2.  Visualization of cortical, subcortical and deep brain neural circuit dynamics during naturalistic mammalian behavior with head-mounted microscopes and chronically implanted lenses.

Authors:  Shanna L Resendez; Josh H Jennings; Randall L Ung; Vijay Mohan K Namboodiri; Zhe Charles Zhou; James M Otis; Hiroshi Nomura; Jenna A McHenry; Oksana Kosyk; Garret D Stuber
Journal:  Nat Protoc       Date:  2016-02-25       Impact factor: 13.491

3.  OpenfMRI: Open sharing of task fMRI data.

Authors:  Russell A Poldrack; Krzysztof J Gorgolewski
Journal:  Neuroimage       Date:  2015-06-03       Impact factor: 6.556

4.  Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types.

Authors:  Shreejoy J Tripathy; Shawn D Burton; Matthew Geramita; Richard C Gerkin; Nathaniel N Urban
Journal:  J Neurophysiol       Date:  2015-03-25       Impact factor: 2.714

5.  Sharing data in the global alzheimer's association interactive network.

Authors:  Scott C Neu; Karen L Crawford; Arthur W Toga
Journal:  Neuroimage       Date:  2015-06-04       Impact factor: 6.556

6.  Outcome heterogeneity and bias in acute experimental spinal cord injury: A meta-analysis.

Authors:  Ralf Watzlawick; Ana Antonic; Emily S Sena; Marcel A Kopp; Julian Rind; Ulrich Dirnagl; Malcolm Macleod; David W Howells; Jan M Schwab
Journal:  Neurology       Date:  2019-06-07       Impact factor: 9.910

Review 7.  A beginner's guide to data stewardship and data sharing.

Authors:  Marcel P Dijkers
Journal:  Spinal Cord       Date:  2019-02-05       Impact factor: 2.772

Review 8.  CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts.

Authors:  Grégory Operto; Marie Chupin; Bénédicte Batrancourt; Marie-Odile Habert; Olivier Colliot; Habib Benali; Cyril Poupon; Catherine Champseix; Christine Delmaire; Sullivan Marie; Denis Rivière; Mélanie Pélégrini-Issac; Vincent Perlbarg; Régine Trebossen; Michel Bottlaender; Vincent Frouin; Antoine Grigis; Dimitri Papadopoulos Orfanos; Hugo Dary; Ludovic Fillon; Chabha Azouani; Ali Bouyahia; Clara Fischer; Lydie Edward; Mathilde Bouin; Urielle Thoprakarn; Jinpeng Li; Leila Makkaoui; Sylvain Poret; Carole Dufouil; Vincent Bouteloup; Gaël Chételat; Bruno Dubois; Stéphane Lehéricy; Jean-François Mangin; Yann Cointepas
Journal:  Neuroinformatics       Date:  2016-07

Review 9.  Behavioral testing in animal models of spinal cord injury.

Authors:  K Fouad; C Ng; D M Basso
Journal:  Exp Neurol       Date:  2020-07-28       Impact factor: 5.330

Review 10.  How to study sex differences in addiction using animal models.

Authors:  Marilyn E Carroll; Wendy J Lynch
Journal:  Addict Biol       Date:  2016-06-26       Impact factor: 4.280

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.