Literature DB >> 31608767

FAIR SCI Ahead: The Evolution of the Open Data Commons for Pre-Clinical Spinal Cord Injury Research.

Karim Fouad1, John L Bixby2, Alison Callahan3, Jeffrey S Grethe4, Lyn B Jakeman5, Vance P Lemmon2, David S K Magnuson6, Maryann E Martone7, Jessica L Nielson8, Jan M Schwab9, Carol Taylor-Burds5, Wolfram Tetzlaff10, Abel Torres-Espin11, Adam R Ferguson11.   

Abstract

Over the last 5 years, multiple stakeholders in the field of spinal cord injury (SCI) research have initiated efforts to promote publications standards and enable sharing of experimental data. In 2016, the National Institutes of Health/National Institute of Neurological Disorders and Stroke hosted representatives from the SCI community to streamline these efforts and discuss the future of data sharing in the field according to the FAIR (Findable, Accessible, Interoperable and Reusable) data stewardship principles. As a next step, a multi-stakeholder group hosted a 2017 symposium in Washington, DC entitled "FAIR SCI Ahead: the Evolution of the Open Data Commons for Spinal Cord Injury research." The goal of this meeting was to receive feedback from the community regarding infrastructure, policies, and organization of a community-governed Open Data Commons (ODC) for pre-clinical SCI research. Here, we summarize the policy outcomes of this meeting and report on progress implementing these policies in the form of a digital ecosystem: the Open Data Commons for Spinal Cord Injury (ODC-SCI.org). ODC-SCI enables data management, harmonization, and controlled sharing of data in a manner consistent with the well-established norms of scholarly publication. Specifically, ODC-SCI is organized around virtual "laboratories" with the ability to share data within each of three distinct data-sharing spaces: within the laboratory, across verified laboratories, or publicly under a creative commons license (CC-BY 4.0) with a digital object identifier that enables data citation. The ODC-SCI implements FAIR data sharing and enables pooled data-driven discovery while crediting the generators of valuable SCI data.

Entities:  

Keywords:  FAIR data; ODC-SCI; community-based repository; data sharing; spinal cord injury

Year:  2019        PMID: 31608767      PMCID: PMC7071068          DOI: 10.1089/neu.2019.6674

Source DB:  PubMed          Journal:  J Neurotrauma        ISSN: 0897-7151            Impact factor:   5.269


  22 in total

1.  Outcome heterogeneity and bias in acute experimental spinal cord injury: A meta-analysis.

Authors:  Ralf Watzlawick; Ana Antonic; Emily S Sena; Marcel A Kopp; Julian Rind; Ulrich Dirnagl; Malcolm Macleod; David W Howells; Jan M Schwab
Journal:  Neurology       Date:  2019-06-07       Impact factor: 9.910

Review 2.  The impact of fraudulent and irreproducible data to the translational research crisis - solutions and implementation.

Authors:  Jörg B Schulz; Mark R Cookson; Laura Hausmann
Journal:  J Neurochem       Date:  2016-10       Impact factor: 5.372

3.  Development of a database for translational spinal cord injury research.

Authors:  Jessica L Nielson; Cristian F Guandique; Aiwen W Liu; Darlene A Burke; A Todd Lash; Rod Moseanko; Stephanie Hawbecker; Sarah C Strand; Sharon Zdunowski; Karen-Amanda Irvine; John H Brock; Yvette S Nout-Lomas; John C Gensel; Kim D Anderson; Mark R Segal; Ephron S Rosenzweig; David S K Magnuson; Scott R Whittemore; Dana M McTigue; Phillip G Popovich; Alexander G Rabchevsky; Stephen W Scheff; Oswald Steward; Grégoire Courtine; V Reggie Edgerton; Mark H Tuszynski; Michael S Beattie; Jacqueline C Bresnahan; Adam R Ferguson
Journal:  J Neurotrauma       Date:  2014-07-31       Impact factor: 5.269

Review 4.  Big data from small data: data-sharing in the 'long tail' of neuroscience.

Authors:  Adam R Ferguson; Jessica L Nielson; Melissa H Cragin; Anita E Bandrowski; Maryann E Martone
Journal:  Nat Neurosci       Date:  2014-11       Impact factor: 24.884

Review 5.  Leveraging biomedical informatics for assessing plasticity and repair in primate spinal cord injury.

Authors:  Jessica L Nielson; Jenny Haefeli; Ernesto A Salegio; Aiwen W Liu; Cristian F Guandique; Ellen D Stück; Stephanie Hawbecker; Rod Moseanko; Sarah C Strand; Sharon Zdunowski; John H Brock; Roland R Roy; Ephron S Rosenzweig; Yvette S Nout-Lomas; Gregoire Courtine; Leif A Havton; Oswald Steward; V Reggie Edgerton; Mark H Tuszynski; Michael S Beattie; Jacqueline C Bresnahan; Adam R Ferguson
Journal:  Brain Res       Date:  2014-11-04       Impact factor: 3.252

Review 6.  Developing a data sharing community for spinal cord injury research.

Authors:  Alison Callahan; Kim D Anderson; Michael S Beattie; John L Bixby; Adam R Ferguson; Karim Fouad; Lyn B Jakeman; Jessica L Nielson; Phillip G Popovich; Jan M Schwab; Vance P Lemmon
Journal:  Exp Neurol       Date:  2017-05-30       Impact factor: 5.330

7.  Derivation of multivariate syndromic outcome metrics for consistent testing across multiple models of cervical spinal cord injury in rats.

Authors:  Adam R Ferguson; Karen-Amanda Irvine; John C Gensel; Jessica L Nielson; Amity Lin; Johnathan Ly; Mark R Segal; Rajiv R Ratan; Jacqueline C Bresnahan; Michael S Beattie
Journal:  PLoS One       Date:  2013-03-27       Impact factor: 3.240

8.  Development of an International Canine Spinal Cord Injury observational registry: a collaborative data-sharing network to optimize translational studies of SCI.

Authors:  Sarah A Moore; Natalia Zidan; Ingo Spitzbarth; Yvette S Nout-Lomas; Nicolas Granger; Ronaldo C da Costa; Jonathan M Levine; Nick D Jeffery; Veronika M Stein; Andrea Tipold; Natasha J Olby
Journal:  Spinal Cord       Date:  2018-05-23       Impact factor: 2.772

9.  Why most published research findings are false.

Authors:  John P A Ioannidis
Journal:  PLoS Med       Date:  2005-08-30       Impact factor: 11.613

10.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

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1.  The Life of a Trailing Spouse.

Authors:  Vance P Lemmon
Journal:  J Neurosci       Date:  2021-01-06       Impact factor: 6.167

Review 2.  Behavioral testing in animal models of spinal cord injury.

Authors:  K Fouad; C Ng; D M Basso
Journal:  Exp Neurol       Date:  2020-07-28       Impact factor: 5.330

3.  Are mitochondria the key to reduce the age-dependent decline in axon growth after spinal cord injury?

Authors:  Theresa C Sutherland; Cédric G Geoffroy
Journal:  Neural Regen Res       Date:  2021-07       Impact factor: 5.135

4.  Reflections on Data Sharing Practices in Spinal Cord Injury Research.

Authors:  John C Gensel; Michael B Orr
Journal:  Neuroinformatics       Date:  2021-01-16

Review 5.  The neuroanatomical-functional paradox in spinal cord injury.

Authors:  Karim Fouad; Phillip G Popovich; Marcel A Kopp; Jan M Schwab
Journal:  Nat Rev Neurol       Date:  2020-12-11       Impact factor: 44.711

6.  Reproducible analysis of disease space via principal components using the novel R package syndRomics.

Authors:  Abel Torres-Espín; Austin Chou; J Russell Huie; Nikos Kyritsis; Pavan S Upadhyayula; Adam R Ferguson
Journal:  Elife       Date:  2021-01-14       Impact factor: 8.140

7.  Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research.

Authors:  Austin Chou; Abel Torres-Espín; J Russell Huie; Karen Krukowski; Sangmi Lee; Amber Nolan; Caroline Guglielmetti; Bridget E Hawkins; Myriam M Chaumeil; Geoffrey T Manley; Michael S Beattie; Jacqueline C Bresnahan; Maryann E Martone; Jeffrey S Grethe; Susanna Rosi; Adam R Ferguson
Journal:  Neurotrauma Rep       Date:  2022-04-05

8.  Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery.

Authors:  Carlos A Almeida; Abel Torres-Espin; J Russell Huie; Dongming Sun; Linda J Noble-Haeusslein; Wise Young; Michael S Beattie; Jacqueline C Bresnahan; Jessica L Nielson; Adam R Ferguson
Journal:  Neuroinformatics       Date:  2021-03-02

9.  Age-Dependent Decline in Neuron Growth Potential and Mitochondria Functions in Cortical Neurons.

Authors:  Theresa C Sutherland; Arthur Sefiani; Darijana Horvat; Taylor E Huntington; Yuanjiu Lei; A Phillip West; Cédric G Geoffroy
Journal:  Cells       Date:  2021-06-29       Impact factor: 6.600

Review 10.  The Influence of Neuron-Extrinsic Factors and Aging on Injury Progression and Axonal Repair in the Central Nervous System.

Authors:  Theresa C Sutherland; Cédric G Geoffroy
Journal:  Front Cell Dev Biol       Date:  2020-03-25
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