Literature DB >> 24870067

Minimum information about a spinal cord injury experiment: a proposed reporting standard for spinal cord injury experiments.

Vance P Lemmon1, Adam R Ferguson, Phillip G Popovich, Xiao-Ming Xu, Diane M Snow, Michihiro Igarashi, Christine E Beattie, John L Bixby.   

Abstract

The lack of reproducibility in many areas of experimental science has a number of causes, including a lack of transparency and precision in the description of experimental approaches. This has far-reaching consequences, including wasted resources and slowing of progress. Additionally, the large number of laboratories around the world publishing articles on a given topic make it difficult, if not impossible, for individual researchers to read all of the relevant literature. Consequently, centralized databases are needed to facilitate the generation of new hypotheses for testing. One strategy to improve transparency in experimental description, and to allow the development of frameworks for computer-readable knowledge repositories, is the adoption of uniform reporting standards, such as common data elements (data elements used in multiple clinical studies) and minimum information standards. This article describes a minimum information standard for spinal cord injury (SCI) experiments, its major elements, and the approaches used to develop it. Transparent reporting standards for experiments using animal models of human SCI aim to reduce inherent bias and increase experimental value.

Entities:  

Keywords:  MIASCI; axonal injury; axonal regeneration; spinal cord injury

Mesh:

Year:  2014        PMID: 24870067      PMCID: PMC4120647          DOI: 10.1089/neu.2014.3400

Source DB:  PubMed          Journal:  J Neurotrauma        ISSN: 0897-7151            Impact factor:   5.269


  47 in total

1.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

2.  The statistical power of abnormal-social psychological research: a review.

Authors:  J COHEN
Journal:  J Abnorm Soc Psychol       Date:  1962-09

3.  Empirical evidence of bias in the design of experimental stroke studies: a metaepidemiologic approach.

Authors:  Nicolas A Crossley; Emily Sena; Jos Goehler; Jannekke Horn; Bart van der Worp; Philip M W Bath; Malcolm Macleod; Ulrich Dirnagl
Journal:  Stroke       Date:  2008-01-31       Impact factor: 7.914

Review 4.  Power failure: why small sample size undermines the reliability of neuroscience.

Authors:  Katherine S Button; John P A Ioannidis; Claire Mokrysz; Brian A Nosek; Jonathan Flint; Emma S J Robinson; Marcus R Munafò
Journal:  Nat Rev Neurosci       Date:  2013-04-10       Impact factor: 34.870

5.  Development of a database for translational spinal cord injury research.

Authors:  Jessica L Nielson; Cristian F Guandique; Aiwen W Liu; Darlene A Burke; A Todd Lash; Rod Moseanko; Stephanie Hawbecker; Sarah C Strand; Sharon Zdunowski; Karen-Amanda Irvine; John H Brock; Yvette S Nout-Lomas; John C Gensel; Kim D Anderson; Mark R Segal; Ephron S Rosenzweig; David S K Magnuson; Scott R Whittemore; Dana M McTigue; Phillip G Popovich; Alexander G Rabchevsky; Stephen W Scheff; Oswald Steward; Grégoire Courtine; V Reggie Edgerton; Mark H Tuszynski; Michael S Beattie; Jacqueline C Bresnahan; Adam R Ferguson
Journal:  J Neurotrauma       Date:  2014-07-31       Impact factor: 5.269

6.  A sensitive and reliable locomotor rating scale for open field testing in rats.

Authors:  D M Basso; M S Beattie; J C Bresnahan
Journal:  J Neurotrauma       Date:  1995-02       Impact factor: 5.269

7.  Lipopolysaccharide can induce errors in anatomical measures of neuronal plasticity by increasing tracing efficacy.

Authors:  Nina Weishaupt; Aleksandra Krajacic; Karim Fouad
Journal:  Neurosci Lett       Date:  2013-10-21       Impact factor: 3.046

8.  BioAssay ontology annotations facilitate cross-analysis of diverse high-throughput screening data sets.

Authors:  Stephan C Schürer; Uma Vempati; Robin Smith; Mark Southern; Vance Lemmon
Journal:  J Biomol Screen       Date:  2011-04

9.  How to increase value and reduce waste when research priorities are set.

Authors:  Iain Chalmers; Michael B Bracken; Ben Djulbegovic; Silvio Garattini; Jonathan Grant; A Metin Gülmezoglu; David W Howells; John P A Ioannidis; Sandy Oliver
Journal:  Lancet       Date:  2014-01-08       Impact factor: 79.321

Review 10.  Functional testing in animal models of spinal cord injury: not as straight forward as one would think.

Authors:  Karim Fouad; Caitlin Hurd; David S K Magnuson
Journal:  Front Integr Neurosci       Date:  2013-11-26
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  41 in total

Review 1.  Long-Term Consequences of Traumatic Brain Injury: Current Status of Potential Mechanisms of Injury and Neurological Outcomes.

Authors:  Helen M Bramlett; W Dalton Dietrich
Journal:  J Neurotrauma       Date:  2014-12-19       Impact factor: 5.269

2.  Fibronectin EDA forms the chronic fibrotic scar after contusive spinal cord injury.

Authors:  John G Cooper; Su Ji Jeong; Tammy L McGuire; Sripadh Sharma; Wenxia Wang; Swati Bhattacharyya; John Varga; John A Kessler
Journal:  Neurobiol Dis       Date:  2018-04-27       Impact factor: 5.996

3.  Developing a spinal cord injury research strategy using a structured process of evidence review and stakeholder dialogue. Part III: outcomes.

Authors:  J W Middleton; L Piccenna; R Lindsay Gruen; S Williams; G Creasey; S Dunlop; D Brown; P E Batchelor; D J Berlowitz; S Coates; J A Dunn; J B Furness; M P Galea; T Geraghty; B K Kwon; S Urquhart; D Yates; P Bragge
Journal:  Spinal Cord       Date:  2015-06-23       Impact factor: 2.772

4.  Outcome heterogeneity and bias in acute experimental spinal cord injury: A meta-analysis.

Authors:  Ralf Watzlawick; Ana Antonic; Emily S Sena; Marcel A Kopp; Julian Rind; Ulrich Dirnagl; Malcolm Macleod; David W Howells; Jan M Schwab
Journal:  Neurology       Date:  2019-06-07       Impact factor: 9.910

5.  Challenges of animal models in SCI research: Effects of pre-injury task-specific training in adult rats before lesion.

Authors:  Zacnicte May; Karim Fouad; Alice Shum-Siu; David S K Magnuson
Journal:  Behav Brain Res       Date:  2015-05-11       Impact factor: 3.332

6.  Development of a database for translational spinal cord injury research.

Authors:  Jessica L Nielson; Cristian F Guandique; Aiwen W Liu; Darlene A Burke; A Todd Lash; Rod Moseanko; Stephanie Hawbecker; Sarah C Strand; Sharon Zdunowski; Karen-Amanda Irvine; John H Brock; Yvette S Nout-Lomas; John C Gensel; Kim D Anderson; Mark R Segal; Ephron S Rosenzweig; David S K Magnuson; Scott R Whittemore; Dana M McTigue; Phillip G Popovich; Alexander G Rabchevsky; Stephen W Scheff; Oswald Steward; Grégoire Courtine; V Reggie Edgerton; Mark H Tuszynski; Michael S Beattie; Jacqueline C Bresnahan; Adam R Ferguson
Journal:  J Neurotrauma       Date:  2014-07-31       Impact factor: 5.269

7.  Identification of miRNAs involved in DRG neurite outgrowth and their putative targets.

Authors:  Dario Motti; Jessica K Lerch; Matt C Danzi; Jared H Gans; Frank Kuo; Tatiana I Slepak; John L Bixby; Vance P Lemmon
Journal:  FEBS Lett       Date:  2017-07-02       Impact factor: 4.124

Review 8.  Big data from small data: data-sharing in the 'long tail' of neuroscience.

Authors:  Adam R Ferguson; Jessica L Nielson; Melissa H Cragin; Anita E Bandrowski; Maryann E Martone
Journal:  Nat Neurosci       Date:  2014-11       Impact factor: 24.884

Review 9.  Behavioral testing in animal models of spinal cord injury.

Authors:  K Fouad; C Ng; D M Basso
Journal:  Exp Neurol       Date:  2020-07-28       Impact factor: 5.330

10.  Independent evaluation of the anatomical and behavioral effects of Taxol in rat models of spinal cord injury.

Authors:  Phillip G Popovich; C Amy Tovar; Stanley Lemeshow; Qin Yin; Lyn B Jakeman
Journal:  Exp Neurol       Date:  2014-07-03       Impact factor: 5.330

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