Literature DB >> 30794049

Data Dissemination: Shortening the Long Tail of Traumatic Brain Injury Dark Data.

Bridget E Hawkins1, J Russell Huie2, Carlos Almeida2, Jiapei Chen2, Adam R Ferguson2,3.   

Abstract

Translation of traumatic brain injury (TBI) research findings from bench to bedside involves aligning multi-species data across diverse data types including imaging and molecular biomarkers, histopathology, behavior, and functional outcomes. In this review we argue that TBI translation should be acknowledged for what it is: a problem of big data that can be addressed using modern data science approaches. We review the history of the term big data, tracing its origins in Internet technology as data that are "big" according to the "4Vs" of volume, velocity, variety, veracity and discuss how the term has transitioned into the mainstream of biomedical research. We argue that the problem of TBI translation fundamentally centers around data variety and that solutions to this problem can be found in modern machine learning and other cutting-edge analytical approaches. Throughout our discussion we highlight the need to pull data from diverse sources including unpublished data ("dark data") and "long-tail data" (small, specialty TBI datasets undergirding the published literature). We review a few early examples of published articles in both the pre-clinical and clinical TBI research literature to demonstrate how data reuse can drive new discoveries leading into translational therapies. Making TBI data resources more Findable, Accessible, Interoperable, and Reusable (FAIR) through better data stewardship has great potential to accelerate discovery and translation for the silent epidemic of TBI.

Entities:  

Keywords:  FAIR principles; analytics; big data; data sharing; traumatic brain injury

Year:  2019        PMID: 30794049      PMCID: PMC7698976          DOI: 10.1089/neu.2018.6192

Source DB:  PubMed          Journal:  J Neurotrauma        ISSN: 0897-7151            Impact factor:   5.269


  82 in total

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Authors:  Lucia Friedli; Ephron S Rosenzweig; Quentin Barraud; Martin Schubert; Nadia Dominici; Lea Awai; Jessica L Nielson; Pavel Musienko; Yvette Nout-Lomas; Hui Zhong; Sharon Zdunowski; Roland R Roy; Sarah C Strand; Rubia van den Brand; Leif A Havton; Michael S Beattie; Jacqueline C Bresnahan; Erwan Bézard; Jocelyne Bloch; V Reggie Edgerton; Adam R Ferguson; Armin Curt; Mark H Tuszynski; Grégoire Courtine
Journal:  Sci Transl Med       Date:  2015-08-26       Impact factor: 17.956

2.  Behavioral and histological characterization of unilateral cervical spinal cord contusion injury in rats.

Authors:  John C Gensel; C Amy Tovar; Frank P T Hamers; Rochelle J Deibert; Michael S Beattie; Jacqueline C Bresnahan
Journal:  J Neurotrauma       Date:  2006-01       Impact factor: 5.269

3.  Big Data and medicine: a big deal?

Authors:  V Mayer-Schönberger; E Ingelsson
Journal:  J Intern Med       Date:  2018-01-08       Impact factor: 8.989

4.  Dark data see the light.

Authors:  Ellen P Neff
Journal:  Lab Anim (NY)       Date:  2018-01-31       Impact factor: 12.625

Review 5.  Developing a data sharing community for spinal cord injury research.

Authors:  Alison Callahan; Kim D Anderson; Michael S Beattie; John L Bixby; Adam R Ferguson; Karim Fouad; Lyn B Jakeman; Jessica L Nielson; Phillip G Popovich; Jan M Schwab; Vance P Lemmon
Journal:  Exp Neurol       Date:  2017-05-30       Impact factor: 5.330

6.  Beneficial effects of minocycline and botulinum toxin-induced constraint physical therapy following experimental traumatic brain injury.

Authors:  Tina I Lam; Deborah Bingham; Ting Ju Chang; Chih Cheng Lee; Jian Shi; Dongmin Wang; Stephen Massa; Raymond A Swanson; Jialing Liu
Journal:  Neurorehabil Neural Repair       Date:  2013-06-18       Impact factor: 3.919

7.  National Database for Autism Research (NDAR): Big Data Opportunities for Health Services Research and Health Technology Assessment.

Authors:  Nalin Payakachat; J Mick Tilford; Wendy J Ungar
Journal:  Pharmacoeconomics       Date:  2016-02       Impact factor: 4.981

8.  Uncovering precision phenotype-biomarker associations in traumatic brain injury using topological data analysis.

Authors:  Jessica L Nielson; Shelly R Cooper; John K Yue; Marco D Sorani; Tomoo Inoue; Esther L Yuh; Pratik Mukherjee; Tanya C Petrossian; Jesse Paquette; Pek Y Lum; Gunnar E Carlsson; Mary J Vassar; Hester F Lingsma; Wayne A Gordon; Alex B Valadka; David O Okonkwo; Geoffrey T Manley; Adam R Ferguson
Journal:  PLoS One       Date:  2017-03-03       Impact factor: 3.240

9.  Pre-Clinical Testing of Therapies for Traumatic Brain Injury.

Authors:  Douglas S DeWitt; Bridget E Hawkins; C Edward Dixon; Patrick M Kochanek; William Armstead; Cameron R Bass; Helen M Bramlett; Andras Buki; W Dalton Dietrich; Adam R Ferguson; Edward D Hall; Ronald L Hayes; Sidney R Hinds; Michelle C LaPlaca; Joseph B Long; David F Meaney; Stefania Mondello; Linda J Noble-Haeusslein; Samuel M Poloyac; Donald S Prough; Claudia S Robertson; Kathryn E Saatman; Sandy R Shultz; Deborah A Shear; Douglas H Smith; Alex B Valadka; Pamela VandeVord; Liying Zhang
Journal:  J Neurotrauma       Date:  2018-08-30       Impact factor: 4.869

10.  Evaluation of excess significance bias in animal studies of neurological diseases.

Authors:  Konstantinos K Tsilidis; Orestis A Panagiotou; Emily S Sena; Eleni Aretouli; Evangelos Evangelou; David W Howells; Rustam Al-Shahi Salman; Malcolm R Macleod; John P A Ioannidis
Journal:  PLoS Biol       Date:  2013-07-16       Impact factor: 8.029

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  6 in total

1.  Accelerated Failure Time Survival Model to Analyze Morris Water Maze Latency Data.

Authors:  Clark R Andersen; Jordan Wolf; Kristofer Jennings; Donald S Prough; Bridget E Hawkins
Journal:  J Neurotrauma       Date:  2020-10-19       Impact factor: 5.269

2.  COVID-19 and Traumatic Brain Injury (TBI); What We Can Learn From the Viral Pandemic to Better Understand the Biology of TBI, Improve Diagnostics and Develop Evidence-Based Treatments.

Authors:  Denes V Agoston
Journal:  Front Neurol       Date:  2021-12-20       Impact factor: 4.003

3.  FAIR Data Reuse in Traumatic Brain Injury: Exploring Inflammation and Age as Moderators of Recovery in the TRACK-TBI Pilot.

Authors:  J Russell Huie; Austin Chou; Abel Torres-Espin; Jessica L Nielson; Esther L Yuh; Raquel C Gardner; Ramon Diaz-Arrastia; Geoff T Manley; Adam R Ferguson
Journal:  Front Neurol       Date:  2021-11-03       Impact factor: 4.003

4.  Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research.

Authors:  Austin Chou; Abel Torres-Espín; J Russell Huie; Karen Krukowski; Sangmi Lee; Amber Nolan; Caroline Guglielmetti; Bridget E Hawkins; Myriam M Chaumeil; Geoffrey T Manley; Michael S Beattie; Jacqueline C Bresnahan; Maryann E Martone; Jeffrey S Grethe; Susanna Rosi; Adam R Ferguson
Journal:  Neurotrauma Rep       Date:  2022-04-05

Review 5.  ENIGMA brain injury: Framework, challenges, and opportunities.

Authors:  Emily L Dennis; David Baron; Brenda Bartnik-Olson; Karen Caeyenberghs; Carrie Esopenko; Frank G Hillary; Kimbra Kenney; Inga K Koerte; Alexander P Lin; Andrew R Mayer; Stefania Mondello; Alexander Olsen; Paul M Thompson; David F Tate; Elisabeth A Wilde
Journal:  Hum Brain Mapp       Date:  2020-06-01       Impact factor: 5.038

6.  Toward a global and reproducible science for brain imaging in neurotrauma: the ENIGMA adult moderate/severe traumatic brain injury working group.

Authors:  Alexander Olsen; Talin Babikian; Erin D Bigler; Karen Caeyenberghs; Virginia Conde; Kristen Dams-O'Connor; Ekaterina Dobryakova; Helen Genova; Jordan Grafman; Asta K Håberg; Ingrid Heggland; Torgeir Hellstrøm; Cooper B Hodges; Andrei Irimia; Ruchira M Jha; Paula K Johnson; Vassilis E Koliatsos; Harvey Levin; Lucia M Li; Hannah M Lindsey; Abigail Livny; Marianne Løvstad; John Medaglia; David K Menon; Stefania Mondello; Martin M Monti; Virginia F J Newcombe; Agustin Petroni; Jennie Ponsford; David Sharp; Gershon Spitz; Lars T Westlye; Paul M Thompson; Emily L Dennis; David F Tate; Elisabeth A Wilde; Frank G Hillary
Journal:  Brain Imaging Behav       Date:  2021-04       Impact factor: 3.978

  6 in total

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