Literature DB >> 24656086

High-resolution NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids.

Nathaniel V Nucci1, Kathleen G Valentine1, A Joshua Wand2.   

Abstract

High-resolution multi-dimensional solution NMR is unique as a biophysical and biochemical tool in its ability to examine both the structure and dynamics of macromolecules at atomic resolution. Conventional solution n class="Chemical">NMR approaches, however, are largely limited to examinations of relatively small (<25kDa) molecules, mostly due to the spectroscopic consequences of slow rotational diffusion. Encapsulation of macromolecules within the protective nanoscale aqueous interior of reverse micelles dissolved in low viscosity fluids has been developed as a means through which the 'slow tumbling problem' can be overcome. This approach has been successfully applied to diverse proteins and nucleic acids ranging up to 100kDa, considerably widening the range of biological macromolecules to which conventional solution NMR methodologies may be applied. Recent advances in methodology have significantly broadened the utility of this approach in structural biology and molecular biophysics.
Copyright © 2014. Published by Elsevier Inc.

Entities:  

Keywords:  Biophysics; Low viscosity fluid; Nucleic acid encapsulation; Protein encapsulation; Reverse micelle NMR; Structural biology

Mesh:

Substances:

Year:  2014        PMID: 24656086      PMCID: PMC4127067          DOI: 10.1016/j.jmr.2013.10.006

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  56 in total

Review 1.  Weak alignment NMR: a hawk-eyed view of biomolecular structure.

Authors:  Ad Bax; Alexander Grishaev
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

2.  Novel surfactant mixtures for NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  Ronald W Peterson; Maxim S Pometun; Zhengshuang Shi; A Joshua Wand
Journal:  Protein Sci       Date:  2005-09-30       Impact factor: 6.725

3.  A new strategy for structure determination of large proteins in solution without deuteration.

Authors:  Yingqi Xu; Yu Zheng; Jing-Song Fan; Daiwen Yang
Journal:  Nat Methods       Date:  2006-11       Impact factor: 28.547

Review 4.  Simultaneous definition of high resolution protein structure and backbone conformational dynamics using NMR residual dipolar couplings.

Authors:  Guillaume Bouvignies; Phineus R L Markwick; Martin Blackledge
Journal:  Chemphyschem       Date:  2007-09-17       Impact factor: 3.102

5.  Mapping the hydration dynamics of ubiquitin.

Authors:  Nathaniel V Nucci; Maxim S Pometun; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2011-07-22       Impact factor: 15.419

6.  Optimization of NMR spectroscopy of encapsulated proteins dissolved in low viscosity fluids.

Authors:  Nathaniel V Nucci; Bryan S Marques; Sabrina Bédard; Jakob Dogan; John M Gledhill; Veronica R Moorman; Ronald W Peterson; Kathleen G Valentine; Alison L Wand; A Joshua Wand
Journal:  J Biomol NMR       Date:  2011-07-12       Impact factor: 2.835

7.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

8.  Reverse micelle encapsulation of membrane-anchored proteins for solution NMR studies.

Authors:  Kathleen G Valentine; Ronald W Peterson; Jamil S Saad; Michael F Summers; Xianzhong Xu; James B Ames; A Joshua Wand
Journal:  Structure       Date:  2010-01-13       Impact factor: 5.006

9.  Structure of the oxidized long-chain flavodoxin from Anabaena 7120 at 2 A resolution.

Authors:  S T Rao; F Shaffie; C Yu; K A Satyshur; B J Stockman; J L Markley; M Sundarlingam
Journal:  Protein Sci       Date:  1992-11       Impact factor: 6.725

10.  Optimized reverse micelle surfactant system for high-resolution NMR spectroscopy of encapsulated proteins and nucleic acids dissolved in low viscosity fluids.

Authors:  Igor Dodevski; Nathaniel V Nucci; Kathleen G Valentine; Gurnimrat K Sidhu; Evan S O'Brien; Arthur Pardi; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2014-02-19       Impact factor: 15.419

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  13 in total

1.  Extending the Detection Limit in Fragment Screening of Proteins Using Reverse Micelle Encapsulation.

Authors:  Brian Fuglestad; Nicole E Kerstetter; Sabrina Bédard; A Joshua Wand
Journal:  ACS Chem Biol       Date:  2019-10-03       Impact factor: 5.100

2.  Entropy in molecular recognition by proteins.

Authors:  José A Caro; Kyle W Harpole; Vignesh Kasinath; Jackwee Lim; Jeffrey Granja; Kathleen G Valentine; Kim A Sharp; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-05       Impact factor: 11.205

3.  Defining the Apoptotic Trigger: THE INTERACTION OF CYTOCHROME c AND CARDIOLIPIN.

Authors:  Evan S O'Brien; Nathaniel V Nucci; Brian Fuglestad; Cecilia Tommos; A Joshua Wand
Journal:  J Biol Chem       Date:  2015-10-20       Impact factor: 5.157

4.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

5.  Characterizing Protein Hydration Dynamics Using Solution NMR Spectroscopy.

Authors:  Christine Jorge; Bryan S Marques; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-04       Impact factor: 1.600

6.  Reverse Micelle Encapsulation of Proteins for NMR Spectroscopy.

Authors:  Brian Fuglestad; Bryan S Marques; Christine Jorge; Nicole E Kerstetter; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-10       Impact factor: 1.600

7.  Site-Resolved and Quantitative Characterization of Very Weak Protein-Ligand Interactions.

Authors:  Brian Fuglestad; Nicole E Kerstetter; A Joshua Wand
Journal:  ACS Chem Biol       Date:  2019-07-01       Impact factor: 5.100

8.  Water loading driven size, shape, and composition of cetyltrimethylammonium/hexanol/pentane reverse micelles.

Authors:  Brian Fuglestad; Kushol Gupta; A Joshua Wand; Kim A Sharp
Journal:  J Colloid Interface Sci       Date:  2019-01-06       Impact factor: 8.128

9.  Biomolecular Crowding Arising from Small Molecules, Molecular Constraints, Surface Packing, and Nano-Confinement.

Authors:  Mary Rose Hilaire; Rachel M Abaskharon; Feng Gai
Journal:  J Phys Chem Lett       Date:  2015-06-18       Impact factor: 6.475

10.  Practical aspects of high-pressure NMR spectroscopy and its applications in protein biophysics and structural biology.

Authors:  José A Caro; A Joshua Wand
Journal:  Methods       Date:  2018-06-30       Impact factor: 3.608

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