Literature DB >> 30638541

Characterizing Protein Hydration Dynamics Using Solution NMR Spectroscopy.

Christine Jorge1, Bryan S Marques1, Kathleen G Valentine2, A Joshua Wand3.   

Abstract

Protein hydration is a critical aspect of protein stability, folding, and function and yet remains difficult to characterize experimentally. Solution NMR offers a route to a site-resolved view of the dynamics of protein-water interactions through the nuclear Overhauser effects between hydration water and the protein in the laboratory (NOE) and rotating (ROE) frames of reference. However, several artifacts and limitations including contaminating contributions from bulk water potentially plague this general approach and the corruption of measured NOEs and ROEs by hydrogen exchange-relayed magnetization. Fortunately, encapsulation of single protein molecules within the water core of a reverse micelle overcomes these limitations. The main advantages are the suppression hydrogen exchange and elimination of bulk water. Here we detail guidelines for the preparation solutions of encapsulated proteins that are suitable for characterization by NOE and ROE spectroscopy. Emphasis is placed on understanding the contribution of detected NOE intensity arising from magnetization relayed by hydrogen exchange. Various aspects of fitting obtained NOE, selectively decoupled NOE, and ROE time courses are illustrated.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Hydration dynamics; Hydrogen exchange; Nuclear Overhauser effect; Protein hydration; Relayed Overhauser effect; Rotating frame Overhauser effect

Mesh:

Substances:

Year:  2018        PMID: 30638541      PMCID: PMC6358200          DOI: 10.1016/bs.mie.2018.09.040

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  30 in total

Review 1.  The effect of water on protein dynamics.

Authors:  G Zaccai
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

2.  Revival of the Intermolecular Nuclear Overhauser Effect for Mapping Local Protein Hydration Dynamics.

Authors:  Daniel Braun; Michael Schmollngruber; Othmar Steinhauser
Journal:  J Phys Chem Lett       Date:  2017-07-12       Impact factor: 6.475

3.  Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids.

Authors:  Andrew Proudfoot; Andreas O Frank; Fiorella Ruggiu; Mulugeta Mamo; Andreas Lingel
Journal:  J Biomol NMR       Date:  2016-04-29       Impact factor: 2.835

4.  Interpolating and extrapolating with hmsIST: seeking a tmax for optimal sensitivity, resolution and frequency accuracy.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2017-03-22       Impact factor: 2.835

Review 5.  Applications of non-uniform sampling and processing.

Authors:  Sven G Hyberts; Haribabu Arthanari; Gerhard Wagner
Journal:  Top Curr Chem       Date:  2012

6.  Magnitude and molecular origin of water slowdown next to a protein.

Authors:  Fabio Sterpone; Guillaume Stirnemann; Damien Laage
Journal:  J Am Chem Soc       Date:  2012-02-22       Impact factor: 15.419

Review 7.  Analysis of water in confined geometries and at interfaces.

Authors:  Michael D Fayer; Nancy E Levinger
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2010       Impact factor: 10.745

8.  Solvent tuning of electrochemical potentials in the active sites of HiPIP versus ferredoxin.

Authors:  Abhishek Dey; Francis E Jenney; Michael W W Adams; Elena Babini; Yasuhiro Takahashi; Keiichi Fukuyama; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

9.  The role of hydration in protein stability: comparison of the cold and heat unfolded states of Yfh1.

Authors:  Miquel Adrover; Gabriel Martorell; Stephen R Martin; Dunja Urosev; Petr V Konarev; Dmitri I Svergun; Xavier Daura; Pierandrea Temussi; Annalisa Pastore
Journal:  J Mol Biol       Date:  2012-02-14       Impact factor: 5.469

10.  Measurement and control of pH in the aqueous interior of reverse micelles.

Authors:  Bryan S Marques; Nathaniel V Nucci; Igor Dodevski; Kristina W C Wang; Evangelia A Athanasoula; Christine Jorge; A Joshua Wand
Journal:  J Phys Chem B       Date:  2014-02-19       Impact factor: 2.991

View more
  4 in total

1.  Protein Solvent Shell Structure Provides Rapid Analysis of Hydration Dynamics.

Authors:  Jayangika N Dahanayake; Elaheh Shahryari; Kirsten M Roberts; Micah E Heikes; Chandana Kasireddy; Katie R Mitchell-Koch
Journal:  J Chem Inf Model       Date:  2019-03-22       Impact factor: 4.956

2.  Membrane Proteins Have Distinct Fast Internal Motion and Residual Conformational Entropy.

Authors:  Evan S O'Brien; Brian Fuglestad; Henry J Lessen; Matthew A Stetz; Danny W Lin; Bryan S Marques; Kushol Gupta; Karen G Fleming; A Joshua Wand
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-30       Impact factor: 15.336

3.  The role of NMR in leveraging dynamics and entropy in drug design.

Authors:  Abhinav Dubey; Koh Takeuchi; Mikhail Reibarkh; Haribabu Arthanari
Journal:  J Biomol NMR       Date:  2020-07-27       Impact factor: 2.835

4.  Protein conformational entropy is not slaved to water.

Authors:  Bryan S Marques; Matthew A Stetz; Christine Jorge; Kathleen G Valentine; A Joshua Wand; Nathaniel V Nucci
Journal:  Sci Rep       Date:  2020-10-16       Impact factor: 4.379

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.