Literature DB >> 29964175

Practical aspects of high-pressure NMR spectroscopy and its applications in protein biophysics and structural biology.

José A Caro1, A Joshua Wand2.   

Abstract

Pressure and temperature are the two fundamental variables of thermodynamics. Temperature and chemical perturbation are central experimental tools for the exploration of macromolecular structure and dynamics. Though it has long been recognized that hydrostatic pressure offers a complementary and often unique view of macromolecular structure, stability and dynamics, it has not been employed nearly as much. For solution NMR applications the limited use of high-pressure is undoubtedly traced to difficulties of employing pressure in the context of modern multinuclear and multidimensional NMR. Limitations in pressure tolerant NMR sample cells have been overcome and enable detailed studies of macromolecular energy landscapes, hydration, dynamics and function. Here we review the practical considerations for studies of biological macromolecules at elevated pressure, with a particular emphasis on applications in protein biophysics and structural biology.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dynamics; High-pressure; Solution NMR; Structure determination; Thermodynamics

Mesh:

Substances:

Year:  2018        PMID: 29964175      PMCID: PMC6133745          DOI: 10.1016/j.ymeth.2018.06.012

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  96 in total

1.  Rapid internal dynamics of BPTI is insensitive to pressure. (15)N spin relaxation at 2 kbar.

Authors:  S Sareth; H Li; H Yamada; C K Woodward; K Akasaka
Journal:  FEBS Lett       Date:  2000-03-17       Impact factor: 4.124

2.  Temperature dependence of the internal dynamics of a calmodulin-peptide complex.

Authors:  Andrew L Lee; Kim A Sharp; James K Kranz; Xiang-Jin Song; A Joshua Wand
Journal:  Biochemistry       Date:  2002-11-19       Impact factor: 3.162

3.  Pulsed pressure perturbations, an extra dimension in NMR spectroscopy of proteins.

Authors:  Werner Kremer; Martin Arnold; Claudia Elisabeth Munte; Rainer Hartl; Markus Beck Erlach; Joerg Koehler; Alexander Meier; Hans Robert Kalbitzer
Journal:  J Am Chem Soc       Date:  2011-08-10       Impact factor: 15.419

4.  A hypothesis to reconcile the physical and chemical unfolding of proteins.

Authors:  Guilherme A P de Oliveira; Jerson L Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

5.  Reply to Kitahara and Mulder: An ensemble view of protein stability best explains pressure effects in a T4 lysozyme cavity mutant.

Authors:  A Joshua Wand; Nathaniel V Nucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-28       Impact factor: 11.205

6.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

7.  Dissociation of the trimeric gp41 ectodomain at the lipid-water interface suggests an active role in HIV-1 Env-mediated membrane fusion.

Authors:  Julien Roche; John M Louis; Alexander Grishaev; Jinfa Ying; Adriaan Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

8.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

9.  Structural plasticity of staphylococcal nuclease probed by perturbation with pressure and pH.

Authors:  Ryo Kitahara; Kazumi Hata; Akihiro Maeno; Kazuyuki Akasaka; Michael S Chimenti; Bertrand Garcia-Moreno E; Martin A Schroer; Christoph Jeworrek; Metin Tolan; Roland Winter; Julien Roche; Christian Roumestand; Karine Montet de Guillen; Catherine A Royer
Journal:  Proteins       Date:  2011-01-20

10.  In situ measurements of pH changes in beta-lactoglobulin solutions under high hydrostatic pressure.

Authors:  Vibeke Orlien; Karsten Olsen; Leif H Skibsted
Journal:  J Agric Food Chem       Date:  2007-04-27       Impact factor: 5.279

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  10 in total

Review 1.  Using NMR spectroscopy to investigate the role played by copper in prion diseases.

Authors:  Rawiah A Alsiary; Mawadda Alghrably; Abdelhamid Saoudi; Suliman Al-Ghamdi; Lukasz Jaremko; Mariusz Jaremko; Abdul-Hamid Emwas
Journal:  Neurol Sci       Date:  2020-04-24       Impact factor: 3.307

2.  How internal cavities destabilize a protein.

Authors:  Mengjun Xue; Takuro Wakamoto; Camilla Kejlberg; Yuichi Yoshimura; Tania Aaquist Nielsen; Michael Wulff Risør; Kristian Wejse Sanggaard; Ryo Kitahara; Frans A A Mulder
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

Review 3.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

4.  Virial Based Berendsen Barostat on GPUs using AMOEBA in Tinker-OpenMM.

Authors:  Matthew Harger; Pengyu Ren
Journal:  Results Chem       Date:  2019-06-20

5.  Protein structural changes characterized by high-pressure, pulsed field gradient diffusion NMR spectroscopy.

Authors:  Venkatraman Ramanujam; T Reid Alderson; Iva Pritišanac; Jinfa Ying; Ad Bax
Journal:  J Magn Reson       Date:  2020-02-19       Impact factor: 2.229

6.  High-pressure small-angle X-ray scattering cell for biological solutions and soft materials.

Authors:  Durgesh K Rai; Richard E Gillilan; Qingqiu Huang; Robert Miller; Edmund Ting; Alexander Lazarev; Mark W Tate; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2021-02-01       Impact factor: 3.304

7.  Structure elucidation of the elusive Enzyme I monomer reveals the molecular mechanisms linking oligomerization and enzymatic activity.

Authors:  Trang T Nguyen; Rodolfo Ghirlando; Julien Roche; Vincenzo Venditti
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-18       Impact factor: 11.205

8.  Volume and compressibility differences between protein conformations revealed by high-pressure NMR.

Authors:  Xingjian Xu; Donald Gagné; James M Aramini; Kevin H Gardner
Journal:  Biophys J       Date:  2021-01-30       Impact factor: 4.033

9.  Exploration of the dynamic interplay between lipids and membrane proteins by hydrostatic pressure.

Authors:  Alexandre Pozza; François Giraud; Quentin Cece; Marina Casiraghi; Elodie Point; Marjorie Damian; Christel Le Bon; Karine Moncoq; Jean-Louis Banères; Ewen Lescop; Laurent J Catoire
Journal:  Nat Commun       Date:  2022-04-01       Impact factor: 17.694

10.  High-pressure NMR measurements provide insights into the different structural states that proteins can adopt.

Authors:  Remco Sprangers
Journal:  Biophys J       Date:  2021-01-22       Impact factor: 4.033

  10 in total

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