Literature DB >> 16140525

Weak alignment NMR: a hawk-eyed view of biomolecular structure.

Ad Bax1, Alexander Grishaev.   

Abstract

Imposing a very slight deviation from the isotropic random distribution of macromolecules in solution in an NMR sample tube permits the measurement of residual internuclear dipolar couplings (RDCs). Such interactions are very sensitive functions of the time-averaged orientation of the corresponding internuclear vectors and thereby offer highly precise structural information. In recent years, advances have been made both in the technology to measure RDCs and in the computational procedures that integrate this information in the structure determination process. The exceptional precision with which RDCs can be measured under weakly aligned conditions is also starting to reveal the mostly, but not universally, subtle effects of internal protein dynamics. Importantly, RDCs potentially can reveal motions taking place on a timescale slower than rotational diffusion and analysis is uniquely sensitive to the direction of motion, not just its amplitude.

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Year:  2005        PMID: 16140525     DOI: 10.1016/j.sbi.2005.08.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  103 in total

1.  Topology and immersion depth of an integral membrane protein by paramagnetic rates from dissolved oxygen.

Authors:  M Sameer Al-Abdul-Wahid; Raffaello Verardi; Gianluigi Veglia; R Scott Prosser
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

2.  Protein alignment using cellulose nanocrystals: practical considerations and range of application.

Authors:  Alexey Y Denisov; Elisabeth Kloser; Derek G Gray; Anthony K Mittermaier
Journal:  J Biomol NMR       Date:  2010-05-12       Impact factor: 2.835

3.  3D maps of RNA interhelical junctions.

Authors:  Maximillian H Bailor; Anthony M Mustoe; Charles L Brooks; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2011-09-15       Impact factor: 13.491

Review 4.  The use of residual dipolar coupling in studying proteins by NMR.

Authors:  Kang Chen; Nico Tjandra
Journal:  Top Curr Chem       Date:  2012

Review 5.  Solution NMR Spectroscopy for the Study of Enzyme Allostery.

Authors:  George P Lisi; J Patrick Loria
Journal:  Chem Rev       Date:  2016-01-06       Impact factor: 60.622

6.  Pressure-induced structural transition of mature HIV-1 protease from a combined NMR/MD simulation approach.

Authors:  Julien Roche; John M Louis; Ad Bax; Robert B Best
Journal:  Proteins       Date:  2015-10-16

7.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

8.  Eigenvector synchronization, graph rigidity and the molecule problem.

Authors:  Mihai Cucuringu; Amit Singer; David Cowburn
Journal:  Inf inference       Date:  2012-12

9.  Solution structure and mutational analysis of pituitary adenylate cyclase-activating polypeptide binding to the extracellular domain of PAC1-RS.

Authors:  Chaohong Sun; Danying Song; Rachel A Davis-Taber; Leo W Barrett; Victoria E Scott; Paul L Richardson; Ana Pereda-Lopez; Marie E Uchic; Larry R Solomon; Marc R Lake; Karl A Walter; Philip J Hajduk; Edward T Olejniczak
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

10.  Modular architecture of Munc13/calmodulin complexes: dual regulation by Ca2+ and possible function in short-term synaptic plasticity.

Authors:  Fernando Rodríguez-Castañeda; Mitcheell Maestre-Martínez; Nicolas Coudevylle; Kalina Dimova; Harald Junge; Noa Lipstein; Donghan Lee; Stefan Becker; Nils Brose; Olaf Jahn; Teresa Carlomagno; Christian Griesinger
Journal:  EMBO J       Date:  2009-12-10       Impact factor: 11.598

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