Literature DB >> 17654630

Simultaneous definition of high resolution protein structure and backbone conformational dynamics using NMR residual dipolar couplings.

Guillaume Bouvignies1, Phineus R L Markwick, Martin Blackledge.   

Abstract

Despite the importance of molecular dynamics for biological activity, most approaches to protein structure determination, whether based on crystallographic or solution studies, propose three-dimensional atomic representations of a single configuration that take no account of conformational fluctuation. Non-averaged anisotropic NMR interactions, such as residual dipolar couplings, that become measurable under conditions of weak alignment, provide sensitive probes of both molecular structure and dynamics. Residual dipolar couplings are becoming increasingly powerful for the study of proteins in solution. In this minireview we present their use for the simultaneous determination of protein structure and dynamics.

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Year:  2007        PMID: 17654630     DOI: 10.1002/cphc.200700353

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  20 in total

1.  Scrutinizing molecular mechanics force fields on the submicrosecond timescale with NMR data.

Authors:  Oliver F Lange; David van der Spoel; Bert L de Groot
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  MQ-HNCO-TROSY for the measurement of scalar and residual dipolar couplings in larger proteins: application to a 557-residue IgFLNa16-21.

Authors:  Sampo Mäntylahti; Outi Koskela; Pengju Jiang; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-08       Impact factor: 2.835

3.  Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics.

Authors:  Nils-Alexander Lakomek; Korvin F A Walter; Christophe Farès; Oliver F Lange; Bert L de Groot; Helmut Grubmüller; Rafael Brüschweiler; Axel Munk; Stefan Becker; Jens Meiler; Christian Griesinger
Journal:  J Biomol NMR       Date:  2008-06-04       Impact factor: 2.835

4.  An improved algorithm for MFR fragment assembly.

Authors:  Georg Kontaxis
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

5.  Perspectives in biological physics: the nDDB project for a neutron Dynamics Data Bank for biological macromolecules.

Authors:  Leonid Rusevich; Victoria García Sakai; Bruno Franzetti; Mark Johnson; Francesca Natali; Eric Pellegrini; Judith Peters; Jörg Pieper; Martin Weik; Giuseppe Zaccai
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-17       Impact factor: 1.890

6.  De novo determination of internuclear vector orientations from residual dipolar couplings measured in three independent alignment media.

Authors:  Ke Ruan; Kathryn B Briggman; Joel R Tolman
Journal:  J Biomol NMR       Date:  2008-05-14       Impact factor: 2.835

Review 7.  Applications of NMR and computational methodologies to study protein dynamics.

Authors:  Chitra Narayanan; Khushboo Bafna; Louise D Roux; Pratul K Agarwal; Nicolas Doucet
Journal:  Arch Biochem Biophys       Date:  2017-05-05       Impact factor: 4.013

Review 8.  High-resolution NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  Nathaniel V Nucci; Kathleen G Valentine; A Joshua Wand
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

9.  Variable helix elongation as a tool to modulate RNA alignment and motional couplings.

Authors:  Elizabeth A Dethoff; Alexandar L Hansen; Qi Zhang; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2009-09-30       Impact factor: 2.229

10.  Toward a unified representation of protein structural dynamics in solution.

Authors:  Phineus R L Markwick; Guillaume Bouvignies; Loic Salmon; J Andrew McCammon; Michael Nilges; Martin Blackledge
Journal:  J Am Chem Soc       Date:  2009-11-25       Impact factor: 15.419

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