The vibrational spectra of two five-coordinate nitrosyl iron porphyrinates, [Fe(OEP)(NO)] (OEP = dianion of 2,3,7,8,12,13,17,18-octaethylporphyrin) and [Fe(DPIX)(NO)] (DPIX = deuteroporphyrin IX), have been studied by oriented single-crystal nuclear resonance vibrational spectroscopy. Single crystals (both are in the triclinic crystal system) were oriented to give vibrational spectra perpendicular to the porphyrin plane. Additionally, two orthogonal in-plane measurements that were also either perpendicular or parallel to the projection of the FeNO plane onto the porphyrin plane yield the complete set of vibrations with iron motion. In addition to cleanly enabling the assignment of the FeNO bending and stretching modes, the measurements reveal that the two in-plane spectra from the parallel and perpendicular in-plane directions for both compounds have substantial differences. The assignment of these in-plane vibrations were aided by density functional theory predictions. The differences in the two in-plane directions result from the strongly bonded axial NO ligand. The direction of the in-plane iron motion is thus found to be largely parallel and perpendicular to the projection of the FeNO plane on the porphyrin plane. These axial ligand effects on the in-plane iron motion are related to the strength of the axial ligand-to-iron bond.
The vibrational spectra of two five-coordinate nitrosyl iron porphyrinates, [Fe(OEP)(NO)] (OEP = dianion of 2,3,7,8,12,13,17,18-octaethylporphyrin) and [Fe(DPIX)(NO)] (DPIX = deuteroporphyrin IX), have been studied by oriented single-crystal nuclear resonance vibrational spectroscopy. Single crystals (both are in the triclinic crystal system) were oriented to give vibrational spectra perpendicular to the porphyrin plane. Additionally, two orthogonal in-plane measurements that were also either perpendicular or parallel to the projection of the FeNO plane onto the porphyrin plane yield the complete set of vibrations with iron motion. In addition to cleanly enabling the assignment of the FeNO bending and stretching modes, the measurements reveal that the two in-plane spectra from the parallel and perpendicular in-plane directions for both compounds have substantial differences. The assignment of these in-plane vibrations were aided by density functional theory predictions. The differences in the two in-plane directions result from the strongly bonded axial NO ligand. The direction of the in-plane iron motion is thus found to be largely parallel and perpendicular to the projection of the FeNO plane on the porphyrin plane. These axial ligand effects on the in-plane iron motion are related to the strength of the axial ligand-to-iron bond.
Nitric oxide (NO) was
once thought to be just a toxic gas but is
now recognized as an essential biological signaling agent and was Science’s molecule of the year in 1992.[1] As is now well-known, NO is important in blood-pressure
regulation, as a neurotransmitter, as well as a (toxic) defense mechanism
in neutrophils and macrophages.[2−13] NO is synthesized by a family of heme enzymes that catalyze the
7-electron oxidation of l-arginine to NO.[14−20]Vibrational spectroscopy has long been used as a structural
probe
for nitrosyl iron porphyrinates. In biological signaling processes,
heme proteins discriminate between NO, CO, and O2 quite
efficiently in a number of systems.[21−24] This selectivity is not always
explained by weak-force interactions between the diatomic molecule
and the binding pocket, and phenomena intrinsic to the heme prosthetic
group may be partly responsible. Vibrational frequencies can be used
to illuminate coordination-site and ligand bonding subtleties beyond
that discernible by X-ray crystallography alone.[25]Nuclear resonance vibrational spectroscopy (NRVS)
is a relatively
new addition to the vibrational toolbox that allows for a more robust
vibrational evaluation of hemecomplexes in the low-frequency region
of the spectrum. NRVS detects the displacement of iron (or other Mössbauer
active nuclides) along the direction of the incident beam, and thus
peak intensity measured from single crystals is dependent upon sample
orientation.[26−36] For porphyrin crystals with all porphyrin planes mutually parallel,
spectra have been typically collected in two orientations, one with
the porphyrin planes normal to the incident beam for observation of
modes with out-of-plane (oop or z-direction) iron
motion and a second with the porphyrin planes parallel to the beam
for observation of modes with in-plane (ip) iron motion. In the original
oop/ip experiments, the in-plane direction was arbitrarily selected
and taken to represent a generalized in-plane spectrum.Recently,
a specialized in-plane (SIP) NRVS method was developed
in which spectra are taken at two in-plane directions perpendicular
to each other.[37] One direction is in-plane
and also parallel to a feature of chemical significance in the complex
(in-plane-x) and the other is in-plane and also normal
to the first (in-plane-y). The three spectra (oop,
in-plane-x, and in-plane-y) taken
along three mutually perpendicular directions together ensure the
observation of intensity from all modes with iron displacement and
together reveal the spatial trajectory of the iron center within each
mode.[Fe(OEP)(NO)][38] (OEP = dianion
of 2,3,7,8,12,13,17,18-octaethylporphyrin)
was selected for the initial SIP experiment because its NO ligand
is well-ordered and because suitable crystals are more easily obtained,
compared to other [Fe(Porph)(NO)] (Porph = dianion of generalized
porphyrin) complexes. Nitrosyl iron porphyrinates often exhibit disorder
of the NO group over two or more axial positions, an apparent consequence
of the well-documented low barrier to rotation about the Fe–NNO bond.[39−41] In this initial experiment, strong in-plane anisotropy
in [Fe(OEP)(NO)] was observed, and the vibrational modes had
distinctly different in-plane-x and in-plane-y components.[37] The in-plane-x measurement was parallel to the Fe–N–O projection
onto the porphyrin mean plane, while that of in-plane-y was normal to this direction.An understanding of the in-plane
anisotropy was aided by a density
functional theory (DFT) spectral prediction using the BP86 functional
and a TZVP basis set. In the calculation, the predicted frequencies
and mode intensities were in good agreement, although with some differences
between the observed and predicted spectra. The detailed information
available from this experiment led us to explore DFT predictions from
several different functionals.[42] The SIP
NRVS method provides a unique opportunity to evaluate DFT calculations
because the directional (x, y, and z) displacements of iron (and all other atoms) within all
vibrational modes are provided in the DFT output files. From these
values, directionally specific predicted spectra (predicted vibrational
density of states or VDOS) are generated for each direction and are
designated as D(v̅), D(v̅) and D(v̅). The DFT calculations can therefore
be evaluated not only for accuracy of predicted frequency but also
for iron directionality, which may help to differentiate between the
influences of the ligand versus porphyrin peripheral groups on iron
motion. These results demonstrated that the calculations based on
the M06-L functional with a TZVP basis set for iron was even better
than that given by the BP86 calculation, and the details of the M06-L
prediction will first be discussed in this paper.We continued
these detailed in-plane measurements with a related
species [Fe(DPIX)(NO)] (DPIX = deuteroporphyrin IX). We were
especially concerned with the question of potential influences of
asymmetric peripheral substiutents. DPIX is closely related to protoporphyrin
IX (i.e., the dianion of protoporphyrin IX dimethyl ester (PPIX))
employed by nature in many heme proteins, and that would have been
preferred for this study. Unfortunately, the PPIX derivative was found
to have a disordered NO and large thermal parameters for the porphyrin
ring.[44] It was therefore unsuitable for
this experiment. Therefore, the deuteroporphyrin-IX dimethylester
derivative was employed. An earlier crystal structure determination[45] had shown that [Fe(DPIX)(NO)] was completely
suitable for the experiment. We report the NRVS spectra obtained in
three orientations including the two in-plane measurements with the
probing X-ray beam parallel and perpendicular to the projection of
the FeNO group onto the porphyrin plane. We used DFT predictions to
aid in the detailed assignment of the in-plane spectra. We find that
in both species the NO ligand has strong effects on the iron in-plane
direction that are described herein.
Experimental
Section
General Information
All reactions and manipulations
for the preparation of the iron(II) porphyrin derivatives were carried
out under argon using a double manifold vacuum line, Schlenkware,
and cannula techniques. Dichloromethane, toluene, and hexanes were
distilled under argon over CaH2 and sodium/benzophenone.
Chlorobenzene was purified by washing with concentrated sulfuric acid,
then with water until the aqueous layer was neutral, dried with sodium
sulfate, and distilled twice over P2O5. 95% 57Fe2O3 was purchased from Cambridge
Isotopes. H2OEP was synthesized by literature methods.[46] Nitric oxide (Mittler Specialty Gases) was purified
by fractional distillation through a trap containing 4 Å molecular
sieves bathed in a dry ice/ethanol slurry.[47]
Small-Scale Metalation
Insertion of 57Fe
into free-baseporphyrins was conducted in purified chlorobenzene
according to a modified Landergren method as follows.[48] Approximately 2 mL of 12 M HCl was used to dissolve ∼0.20
mmol 95% 57Fe enriched Fe2O3contained
in a 250 mL Schlenk flask. After 5 min of stirring, the HCl was removed
under vacuum to near dryness, and subsequent steps of the metalation
reaction were done in an inert environment using standard Schlenk
procedures. Failure to maintain an inert environment will likely result
in an incomplete or inefficient metal insertion. Freshly distilled
chlorobenzene (100 mL) was added via cannula, and the mixture was
refluxed for 2 h in a hot oil bath. Half of the chlorobenzene was
removed by distillation, and 10 mL of a chlorobenzene solution containing
∼0.15 mmol of H2Porph and 0.4 mL of 2,4,6-collidine
was added via cannula. After refluxing for 3 h, chlorobenzene was
removed under vacuum, and the residue was dissolved in 50 mL of CH2Cl2. The solution was washed twice with 50 mL of
DI water, thrice with 50 mL of 1 M HCl, and once with 50 mL of DI
water. After drying over Na2SO4 and filtering
through a sintered-glass filter, solvent was removed by rotoevaporation.
Minimal CH2Cl2 was used to redissolve the product
and transfer to an evaporation dish. The remaining solvent was evaporated
using very low heat.
Reductive Nitrosylation
Chloroporphyrinatoiron(III)
compounds were reductively nitrosylated under argon, and all solvents
used were degassed by sparging with argon for 5 min. Liquid–liquid
diffusion crystallization was done with methanol as the counter solvent
in 40 cm × 7 mm glass tubes sealed with rubber septa. Crystals
were typically harvested after about 10 d, washed with methanol, and
immediately mounted for the NRVS orientation procedure.
[57Fe(OEP)(NO)]
After metalation as described
above, the resulting [57Fe(OEP)(Cl)] was reductively
nitrosylated: 75 mg (0.12 mmol) was dissolved in 2.5 mL of CHCl3, 0.2 mL of pyridine, and 0.2 mL of methanol then sparged
with nitric oxide for 5 min. The reaction solution was divided between
four glass tubes for crystallization by liquid–liquid diffusion.
[57Fe(DPIX)(NO)]
Free-base dueteroporphyrin
IX dimethyl ester was purchased from Frontier Scientific. After metalation
as described above, the resulting [57Fe(DPIX)(Cl)]
was reductively nitrosylated: 30 mg (0.05 mmol) was dissolved in 1.5
mL of CHCl3, 0.1 mL of pyridine, and 0.1 mL of methanol
then sparged with nitric oxide for 5 min. The reaction solution was
divided between three glass tubes for crystallization by liquid–liquid
diffusion.
Crystal Mounting
Crystals were mounted
onto specially
prepared dual arc goniometer heads. Copper wire, 4–5 cm in
length and 18 gauge, was affixed to the goniometer and bent into a
u-shape. A glass fiber, 5–8 mm in length, was then superglued
to project along the goniometer ϕ-axis. The connection of the
wire into the goniometer head was fortified with epoxy resin. A crystal
was then affixed to the tip of the glass fiber using super glue. The
wire was then carefully bent so that the crystal was approximately
on the ϕ-axis and then stretched to the required height for
centering. Crystals were then oriented for NRVS analysis along specified
in-plane axes by methods described in the Supporting
Information.
NRVS Spectra
Spectra were measured
at Sector 3-ID at
the Advanced Photon Source, Argonne National Laboratory, Argonne IL.
Powders were mulled with a minimal amount of Apiezon-M vacuum grease,
then put into the 1 × 2 × 10 mm3 cavity of a
3 × 8 × 15 mm3 polystyrene sample “coffin”,
which was directly mounted in a He flow cryostat, and cooled to 20
K. Single-crystal samples were previously mounted and aligned on goniometer
heads that were now screwed into place on a rotating stage. The mounted
crystals were then navigated into the X–ray beam by translations
of the stage and rotated to the predetermined ϕ angle required
for the particular direction of analysis desired. Vibration spectra
were measured using an in-line high-resolution monochromator operating
at 14.4125 keV with 1.0 meV bandwidth scanning the energy of incident
X-ray beam.[49] Spectra were recorded between
−30 and 80 meV in steps of 0.25 meV, and all scans (3–6
replicates) were normalized to the intensity of the incident beam
and added. NRVS raw data were converted to the VDOS using the program
PHOENIX.[26,50]For both NO species, measurements
were made with three directions of the analyzing X-ray beam, either
normal to the porphyrin plane (the z direction) or
parallel to the porphyrin plane and also either perpendicular (the y-direction) or parallel (the x-direction)
to the FeNO plane.
Vibrational Predictions and Predicted Mode
Composition Factors e2
The Gaussian09
program package[51] was used to optimize
the structures and for
frequency analysis. The S = 1/2 complexes [Fe(OEP)(NO)]
and [Fe(DPIX)(NO)] were fully optimized without any constraints,
using the spin-unrestricted DFT method. The starting structure was
obtained from the crystal structure of triclinic [Fe(OEP)(NO)][52,53] and [Fe(DPIX)(NO)].[45] Frequency
calculations were performed on the fully optimized structures at the
same level to obtain the vibrational frequencies of the 57Fe isotope set. The frequencies reported here were not scaled. The
frequency data were created using the high-precision format vibrational
frequency eigenvectors to calculate mode composition factors (e2) and VDOS as described below.We studied
two classes of functionals: (1) generalized gradient approximation
(GGA) functionals (BP86),[54] which contain
the exchange and GGA correlation functionals, and (2) meta-GGA functional
(M06-L),[55] which is a local meta-GGA functional.
In general, we used triple-ζ valence basis sets with polarization
functions (TZVP)[56] on iron and 6-31G* for
all other atoms.The G09 output files from the DFT calculations
can be used to generate
predicted mode composition factors with our scripts.[42] The mode composition factors e2 for atom j and frequency mode α are
the fraction of total kinetic energy contributed by atom j (here: 57Fe, the NRVS active nucleus). The normal mode
calculations are obtained from the atomic displacement matrix together
with the equationwhere the sum over i runs
over all atoms of the molecule, m is the atomic mass of atom i, and r is the absolute length of
the Cartesian displacement vector for atom i. The
polarized mode composition factors are defined in terms of two distinct
in-plane directions, which can be calculated from a projection of
the atomic displacement vectors x and y (eq 1).[58] The out-of-plane
atomic displacement perpendicular to the resulting porphyrin plane
for a normal mode is obtained from a projection of the atomic displacement
vector z (eq 2).The x, y, and z components of the iron normal mode energy
for [Fe(OEP)(NO)] and [Fe(DPIX)(NO)] with eFe2 ≥
0.005 are given in Tables S2–S5 of the Supporting Information.The predicted mode composition
factors e2 can also be compared to the
integrated spectral areas obtained
from NRVS. Therefore VDOS intensities can be simulated from the mode
composition factors, using the Gaussian normal distributions function,
where the full width at half height (fwhh) is defined appropriately
by considering the spectral resolution in the experiment. In this
study, the MATLAB R2010a software was used to generate the predicted
NRVS curves.
Results
The directionally dependent
NRVS spectra in the three orthogonal
directions are shown for [Fe(OEP)(NO)][37] in Supporting Information, Figure S1 and
for [Fe(DPIX)(NO)] in Figure 1. The dominant
in-plane NRVS region occurs between 250 and 425 cm–1 for both [Fe(OEP)(NO)] and [Fe(DPIX)(NO)]. For [Fe(OEP)(NO)]
this region includes peaks of moderate intensity at ∼310 cm–1, the strongest in-plane peaks, 350 cm–1 for in-plane-x and 342 cm–1 for
in-plane-y, and the Fe–N–O bending
mode that only shows in-plane signal in the x-direction.
For [Fe(DPIX)(NO)] the central, most intense peaks are 342 cm–1 for in-plane-x and 331 and 347 cm–1 for in-plane-y (Figure 1, green and red lines). The peaks to the lower-frequency
side of the strongest peaks are of significantly lower intensity than
the corresponding peaks in [Fe(OEP)(NO)] and the bending mode
at 401 cm–1 for [Fe(DPIX)(NO)] that has an
in-plane-x but no in-plane-y signal.
Figure 1
Directional
contributions to the VDOS of [Fe(DPIX)(NO)]. (blue)
Out-of-plane. (green) In-plane-x. (red) In-plane-y.
Directional
contributions to the VDOS of [Fe(DPIX)(NO)]. (blue)
Out-of-plane. (green) In-plane-x. (red) In-plane-y.The out-of-plane NRVS
spectra each exhibit vibrations involving
porphyrin distortions in addition to a doming mode, the z-component of the Fe–N–O bend, and the Fe–NNO stretching mode. For [Fe(OEP)(NO)] and [Fe(DPIX)(NO)],
respectively, porphyrin doming contributes to modes at 158 and 183
cm–1, Fe–N–O bending contributes to
modes at 394 and 399 cm–1, and Fe–NNO stretching contributes to modes at 517 and 528 cm–1. Vibrational correlation analysis[57] indicates
that doming contributes to additional out-of-plane signal(s) in the
very low-frequency range (<100 cm–1) observable
(Figure 1, blue) above the lattice vibrational
modes, which can be seen as broad peaks between 0 and 80 cm–1 in the in-plane spectra (Figure 1, green
and red). DFT calculations for predictions of the vibrational spectra
for both complexes were carried out utilizing two different functionals
(BP86 and M06-L). Comparisons of the experimental spectra and theoretical
predictions will be discussed subsequently.
Spectral Predictions
The results of DFT calculations
are shown in figures cited throughout the paper. Figures include experimental
NRVS (line traces) overlaid on the corresponding predicted NRVS spectra
(shaded) and predicted mode composition factors or eFe2 (bars) for n = x, y, z. Figure 2 shows the in-plane predictions for [Fe(OEP)(NO)]
from the BP86 and M06-L functionals, which shows the significantly
higher quality predictions from the M06-L calculation. Supporting Information, Figure S2 shows the out-of-plane
predictions for [Fe(OEP)(NO)] from the BP86 and M06-L functionals.
Figure 3 shows the in-plane predictions for
[Fe(DPIX)(NO)] from the BP86 and M06-L functionals. Figure 4 shows the out-of-plane predictions for [Fe(DPIX)(NO)]
from the BP86 and M06-L functionals. The in-plane-y spectra in Figures 2 and 3 are shown with the ordinate axes inverted to facilitate in-plane-x versus in-plane-y frequency comparisons.
An initial assessment of DFT accuracy can be assessed visually from
the figures by comparing the predicted and experimental VDOS.
Figure 2
In-plane “mirror”
plots of [Fe(OEP)(NO)] that display
the (line) measured and (shaded) predicted contributions to the VDOS
from Fe motion. (green traces) Observed in-plane-x. (light green, shaded spectra) Predicted D. (dark green bars) Predicted eFe2. (red line) Observed in-plane-y. (pink, shaded spectra) Predicted D. (dark red bars) Predicted eFe2. Direction of the X-ray beam indicated by
the black arrow. Predictions made using (top) BP86/TZVP and (bottom)
M06-L/TZVP.
Figure 3
In-plane “mirror”
plots of [Fe(DPIX)(NO)] that display
the (line) measured and (shaded) predicted contributions to the VDOS
from Fe atom motion. (green trace) Observed in-plane-x. (light green, shaded spectra) Predicted D. (dark green bars) Predicted eFe2. (red line) Observed in-plane-y. (pink, shaded spectra) Predicted D. (dark red bars) Predicted eFe2. Direction of the X-ray beam indicated by
the black arrow. Predictions made using (top) BP86/TZVP and (bottom)
M06-L/TZVP.
Figure 4
Out-of-plane contributions
to the VDOS from Fe atom motion for
(blue traces) [Fe(DPIX)(NO)], (light blue shaded, top) BP86/TZVP predicted
VDOS, (light blue shaded, bottom) M06-L/TZVP predicted VDOS, and (dark
blue bars) eFe2.
In-plane “mirror”
plots of [Fe(OEP)(NO)] that display
the (line) measured and (shaded) predicted contributions to the VDOS
from Fe motion. (green traces) Observed in-plane-x. (light green, shaded spectra) Predicted D. (dark green bars) Predicted eFe2. (red line) Observed in-plane-y. (pink, shaded spectra) Predicted D. (dark red bars) Predicted eFe2. Direction of the X-ray beam indicated by
the black arrow. Predictions made using (top) BP86/TZVP and (bottom)
M06-L/TZVP.In-plane “mirror”
plots of [Fe(DPIX)(NO)] that display
the (line) measured and (shaded) predicted contributions to the VDOS
from Fe atom motion. (green trace) Observed in-plane-x. (light green, shaded spectra) Predicted D. (dark green bars) Predicted eFe2. (red line) Observed in-plane-y. (pink, shaded spectra) Predicted D. (dark red bars) Predicted eFe2. Direction of the X-ray beam indicated by
the black arrow. Predictions made using (top) BP86/TZVP and (bottom)
M06-L/TZVP.Out-of-plane contributions
to the VDOS from Fe atom motion for
(blue traces) [Fe(DPIX)(NO)], (light blue shaded, top) BP86/TZVP predicted
VDOS, (light blue shaded, bottom) M06-L/TZVP predicted VDOS, and (dark
blue bars) eFe2.
Discussion
In an earlier communication,[37] we had
explored the vibrational spectrum of the nitrosyl complex [Fe(OEP)(NO)]
with specially oriented crystal specimens. In this Paper we are again
concerned with specially oriented crystals for a related species,
[Fe(DPIX)(NO)], with asymmetrical peripheral substituents. The [Fe(OEP)(NO)]
study demonstrated that the anisotropy of in-plane vibrations could
be resolved by appropriate oriented single-crystal measurements. The
combination of the experimental spectra and DFT vibrational predictions
showed that the in-plane vibrational modes were highly influenced
by the nitrosyl ligand; the iron motion was predominantly either along
or normal to the Fe–N–O plane. Thus the orientation
of the axial NO ligand, rather than the direction of the in-plane
iron–porphyrinnitrogen (Fe–NP) bonds, controls
the direction of the in-plane iron motion.We expanded upon
that study with an analysis of a DFT calculation
based on the functional M06-L/TZVP for [Fe(OEP)(NO)], which had clearly
proven to be the most accurate VDOS predictor, as established by an
in-depth comparison of a multitude of functional/basis set combinations.[42] The M06-L-based calculation is shown to be superior
in both mode frequency accuracy and iron motion directionality relative
to the earlier BP86 calculation.The top portion of Figure 2 shows the experimental
in-plane vibrational spectrum and the results of the DFT predictions
based on a BP86 functional calculation; the two orthogonal in-plane
directions are shown. As had been discussed previously,[37] this combination of experiment and calculations
allowed us to reach the conclusion that the orientation of the bent
FeNO group controlled the direction of the in-plane iron motion. We
now show that predictions based on the use of the M06-L functional[55] provide even better agreement in the prominent
in-plane region between 280 and 370 cm–1, as can
be seen in the bottom portion of Figure 2.
For the peaks at ∼300 cm–1 of in-plane-x, the BP86/TZVP prediction gives two peaks, one apparently
underestimated in frequency and the other in intensity, whereas M06-L/TZVP
appears to have the mode frequencies well-predicted and lacks only
slightly in predicted intensity. In-plane-y at ∼300
cm–1 is underestimated in frequency by BP86/TZVP
and nearly perfectly predicted by M06-L/TZVP. The remainder of the
prominent in-plane peaks are predicted exceedingly well by M06-L/TZVP,
even in peak shape, consistent with an accurate prediction of the
smaller satellites of the 343 cm–1 mode of in-plane-y and the trio of moderate-intensity modes that contribute
to the 350 cm–1 observed peak in in-plane-x.In the lower-frequency region, below 280 cm–1,
the M06-L/TZVP-predicted VDOS are marginally better than those of
BP86/TZVP, owing mostly to the overpredicted peak intensities, ∼210
in-plane-y and ∼230 cm–1 in-plane-x of the latter. The nearly identical
peaks at 182 and 183 cm–1 that appear in both the x- and y-experimental spectra have predicted
frequencies low by ∼20 cm–1, and the BP86/TZVP
calculation comes closer to forecasting their observed degeneracy.
The weak peaks in the higher-frequency regime above 370 cm–1 are predicted slightly better in frequency by BP86/TZVP, but the
same calculation severely overestimates the Fe–N–O bending
mode frequency: 394 cm–1 observed and 417 cm–1 predicted.The improvement in agreement between
experiment and prediction
extends to the out-of-plane portion of the spectrum as well, as can
be seen in Supporting Information, Figure S2 that shows the out-of-plane component. M06-L/TZVP perfectly predicts
the Fe–N–O bending mode frequency and eFe2. As can be seen in Supporting
Information, Figure S2, eFe2 is moderately underestimated by the same calculation. Also apparent
in Supporting Information, Figure S2 is
the overestimation of Fe–NO stretching frequency by BP86/TZVP:
623 cm–1 predicted and 517 cm–1 observed. M06-L/TZVP predicts this mode at 477 cm–1, a significant improvement. Other peaks of interest are the iron-doming
mode observed at 158 cm–1 and the very low-frequency
modes, below 100 cm–1, all of which have predicted
frequencies underestimated by 10–20 cm–1 by
both calculations. The very low frequency modes have significant observed
intensity above the lattice modes, only in the out-of-plane or z-direction, as demonstrated in Supporting
Information, Figure S1 (blue trace, 50–100 cm–1).Supporting Information, Figures S3 and
S4 show the predicted x, y, and z components of all modes with significant
ironcontributions
from the BP86 and M06-L predictions, respectively. As noted, both
calculations display very good agreement with the experimental data.
The two bar graphs clearly show that the directional character of
all major in-plane modes are predominantly either x or y. In this definition of the coordinate system, x is in the plane defined by the projection of the FeNO
plane, and y is perpendicular to the FeNO plane.
As expected, with this coordinate frame, the bending mode has only x and z components. We conclude that the
orientation of the bent axial FeNO group, and not the direction of
the in-plane Fe–NP bonds, controls the direction
of all major in-plane iron motion.What features of the [Fe(OEP)(NO)]
molecule lead to such strongly
polarized vibrational spectra? The vibrational spectra appear to reflect
the strong asymmetry in the interaction between the Fe dπ orbitals and the NO π* orbitals parallel and perpendicular
to the FeNO plane, owing to the nonlinear Fe–N–O group
and the extra (odd) electron in the NO π* orbital. As we have
noted recently,[59] this effect is clearly
related to the strength of the axial Fe–X bond with ligands
that remove the 4-fold degeneracy. For a series of [Fe(OEP)(X)] species,
the control of iron directionality is NO > general imidazolate
(Im–) > general imidazole (HIm).We have
now extended the detailed oriented crystal NRVS measurements
and calculations to a “natural” nitrosyl porphyrin derivative.
The oriented single-crystal measurements require that the molecules
crystallize in a system where all porphyrin planes are parallel to
each other and that the axial ligands be ordered and have the same
relative orientation. These requirements are met by [Fe(DPIX)(NO)],[45] but not by [Fe(PPIX)(NO)]. Unfortunately,
[Fe(PPIX)(NO)], which was finally crystallized after much effort,
has a disordered NO group.[44]Detailed
oriented single-crystal NRVS spectra and DFT calculations
were also obtained for “natural” [Fe(DPIX)(NO)], that
is, a derivative with a peripheral substituent pattern similar to
that of protoporphyrin IX.[60] Figure 3 shows the experimental in-plane vibrational spectra
in two orthogonal directions and the results of the DFT predictions
based on the BP86 functional calculation (top); the spectral results
based on the M06-L predictions are shown in the bottom panel. Figure 4 provides the information obtained for the oriented
crystal data in the out-of-plane (heme normal) direction. Satisfactory
predictions of the out-of-plane vibrations have always been the more
difficult challenge for DFT calculations,[34] but Figure 4 clearly shows that the M06-L-based
predictions are satisfying and superior. Both peak frequencies and
intensities are in good agreement, especially the Fe–NO stretching
frequency predicted at 503 cm–1 and observed at
528 cm–1. The FeNO bending frequency is observed
at 399 cm–1 and predicted at 396 cm–1.The M06-L predictions are also seen to be superior for the
in-plane
spectra (Figure 3). The intense in-plane bands
between 250 and 400 cm–1 are predicted by the M06-L
calculation in both the x and y directions
to within a few wavenumbers. The intensity of the shoulders around
290 cm–1 in both directions are moderately overestimated
but agree well in frequency. The central in-plane-x mode at 297 cm–1 is predicted strikingly well,
as are the shoulder at 365 cm–1 and the bending
mode at 401 cm–1. The greatest discrepancy is in
the intensity proportioning of the double peak observed at 329 and
345 cm–1 in the in-plane-y spectrum.
However, if the 337 cm–1 peak (one of the two predicted
modes at 323 and 337 cm–1) would be shifted to higher
frequency by only ∼10 cm–1, the double peak
intensities would become more even.Figures 5 and 6 display
bar graphs showing the directional character of the iron motion in
[Fe(DPIX)(NO)] from two DFT predictions. The predictions for M06-L
(Figure 6), which we believe to be the more
reliable, show that the in-plane iron motion is mostly in directions
that are either parallel or perpendicular to the FeNO plane and not
along the Fe–Np directions. Thus the orientation
of the axial Fe–N–O group is most important for the
in-plane vibrational directions. This is similar to what has been
concluded for the [Fe(OEP)(NO)] case. This can be seen in the predicted
character of the six most intense in-plane vibrations for [Fe(DPIX)(NO)]
shown in the MOLEKEL[61] depictions of Figure 7. The Fe–N–O orientation effects may
be slightly modified by the asymmetric effects of peripheral substituents.
Previous powder measurements on Fe(Porph)(NO)], where derivatives
included DPIX, PPIX, and the dianion of mesoporphyrin IX dimethyl
ester (MPIX), showed that small changes in the peripheral porphyrin
substituents had real effects on the iron in-plane vibrational envelope.[62]
Figure 5
Mode composition factors of [Fe(DPIX)(NO)]. Total column
height
represents iron kinetic energy fraction for modes. Height of colored
segments reflects the directional components of the iron kinetic energy
fraction. (green) eFe2. (red) eFe2. (blue) eFe2. Predictions made using BP86/TZVP.
Figure 6
Mode composition factors of [Fe(DPIX)(NO)].
Total column height
represents iron kinetic energy fraction for modes. Height of colored
segments reflects the directional components of the iron kinetic energy
fraction. (green) eFe2. (red) eFe2. (blue) eFe2. Predictions made using M06L/TZVP.
Figure 7
MOLEKEL depictions of the six most intense (eFe2 > 0.096)
in-plane vibrations based on the M06-L predictions.
Mode composition factors of [Fe(DPIX)(NO)]. Total column
height
represents iron kinetic energy fraction for modes. Height of colored
segments reflects the directional components of the iron kinetic energy
fraction. (green) eFe2. (red) eFe2. (blue) eFe2. Predictions made using BP86/TZVP.Mode composition factors of [Fe(DPIX)(NO)].
Total column height
represents iron kinetic energy fraction for modes. Height of colored
segments reflects the directional components of the iron kinetic energy
fraction. (green) eFe2. (red) eFe2. (blue) eFe2. Predictions made using M06L/TZVP.MOLEKEL depictions of the six most intense (eFe2 > 0.096)
in-plane vibrations based on the M06-L predictions.Although the differences in the structures between
[Fe(OEP)(NO)][53] and [Fe(DPIX)(NO)][45] are marginally significant, at best, the differences
are
consistent with the observed differences in the vibrational data.
The length of the Fe–N(NO) bond is 1.7307(7) Å in the
OEP derivative and 1.723(3) Å in the DPIX derivative, consistent
with the lower-frequency value of 517 cm–1 in OEP
and the 528 cm–1 value in DPIX. The doming mode
differences (158 cm–1 in OEP and 183 cm–1 in DPIX) might correlate with the small differences in displacement
from the four nitrogen-atom plane (0.28 Å in OEP and 0.26 Å
in DPIX), although vibrational mixing with out-of-plane substituent
displacement may also contribute. Predicting the structural effects
on the FeNO bend appears to be more difficult, and in any case, there
is not a meaningful difference in the two Fe–N–O angles
(142.7(1)° in OEP and 143.1(3)° in DPIX).The current
studies continue to demonstrate the unusual properties
of NO as a ligand in iron porphyrinate systems, especially those of
{FeNO}7 systems. These include a strong trans-directing
influence in six-coordinate {FeNO}7 species,[32−36,63,64] the off-axis tilting of the Fe–NO bond in both five- and
six-coordinate {FeNO}7 complexes,[52,53,65] along with the induced asymmetry of the
equatorial Fe–Np bonds, and the importance of the
FeNO orientation on the direction of in-plane iron motion.[37,42] The present Investigation extends these conclusions to a β-substituted
porphyrin system more closely resembling biologically occurring hemes.
Although the biological significance of the structural deviations
from axial symmetry remain to be explored, the observation of five-coordinate
nitrosyl hemes in NO-signaling proteins[66,67] continues
to fuel discussion of the contribution of the trans-directing influence
of NO to activation of these proteins.The important effects
of the NO orientation on the iron vibrational
spectrum appears to continue to be significant in related six-coordinate
species. SIP NRVS data collection and analysis on a crystallographically
appropriate six-coordinate NO derivative are in progress.
Summary
Detailed experimental and theoretical analyses
of oriented single-crystal NRVS of two five-coordinate NO derivatives,
[Fe(OEP)(NO)] and [Fe(DPIX)(NO)], show that the strongly
bonded axial NO ligand markedly affects the direction of the in-plane
iron motion. The major directions of the in-plane motion are parallel
and perpendicular to the projection of the FeNO plane onto the porphyrin
plane. These directions are oblique to the direction of the in-plane
Fe–NP bonds. The effects of the axial ligand on
the in-plane iron motion appears to be related to the strength of
the axial bonding.
Authors: Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage Journal: J Am Chem Soc Date: 2005-08-17 Impact factor: 15.419
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