Literature DB >> 15053610

Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

Bogdan M Leu1, Marek Z Zgierski, Graeme R A Wyllie, W Robert Scheidt, Wolfgang Sturhahn, E Ercan Alp, Stephen M Durbin, J Timothy Sage.   

Abstract

We use quantitative experimental and theoretical approaches to characterize the vibrational dynamics of the Fe atom in porphyrins designed to model heme protein active sites. Nuclear resonance vibrational spectroscopy (NRVS) yields frequencies, amplitudes, and directions for 57Fe vibrations in a series of ferrous nitrosyl porphyrins, which provide a benchmark for evaluation of quantum chemical vibrational calculations. Detailed normal mode predictions result from DFT calculations on ferrous nitrosyl tetraphenylporphyrin Fe(TPP)(NO), its cation [Fe(TPP)(NO)]+, and ferrous nitrosyl porphine Fe(P)(NO). Differing functionals lead to significant variability in the predicted Fe-NO bond length and frequency for Fe(TPP)(NO). Otherwise, quantitative comparison of calculated and measured Fe dynamics on an absolute scale reveals good overall agreement, suggesting that DFT calculations provide a reliable guide to the character of observed Fe vibrational modes. These include a series of modes involving Fe motion in the plane of the porphyrin, which are rarely identified using infrared and Raman spectroscopies. The NO binding geometry breaks the four-fold symmetry of the Fe environment, and the resulting frequency splittings of the in-plane modes predicted for Fe(TPP)(NO) agree with observations. In contrast to expectations of a simple three-body model, mode energy remains localized on the FeNO fragment for only two modes, an N-O stretch and a mode with mixed Fe-NO stretch and FeNO bend character. Bending of the FeNO unit also contributes to several of the in-plane modes, but no primary FeNO bending mode is identified for Fe(TPP)(NO). Vibrations associated with hindered rotation of the NO and heme doming are predicted at low frequencies, where Fe motion perpendicular to the heme is identified experimentally at 73 and 128 cm-1. Identification of the latter two modes is a crucial first step toward quantifying the reactive energetics of Fe porphyrins and heme proteins.

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Year:  2004        PMID: 15053610      PMCID: PMC1570756          DOI: 10.1021/ja038526h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  88 in total

1.  Nuclear inelastic x-ray scattering of FeO to 48 GPa.

Authors:  V V Struzhkin; H K Mao; J Hu; M Schwoerer-Böhning; J Shu; R J Hemley; W Sturhahn; M Y Hu; E E Alp; P Eng; G Shen
Journal:  Phys Rev Lett       Date:  2001-11-27       Impact factor: 9.161

2.  Lack of a role for iron in the Lyme disease pathogen.

Authors:  J E Posey; F C Gherardini
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

3.  Revisiting the kinetics of nitric oxide (NO) binding to soluble guanylate cyclase: the simple NO-binding model is incorrect.

Authors:  David P Ballou; Yunde Zhao; Philip E Brandish; Michael A Marletta
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-03       Impact factor: 11.205

4.  Spectroscopic studies and bonding model for nitric oxide complexes of iron porphyrins.

Authors:  B B Wayland; L W Olson
Journal:  J Am Chem Soc       Date:  1974-09-18       Impact factor: 15.419

5.  The crystal structure and molecular stereochemistry of -oxo-bis( , , , -tetraphenylporphinatoiron (3)).

Authors:  A B Hoffman; D M Collins; V W Day; E B Fleischer; T S Srivastava; J L Hoard
Journal:  J Am Chem Soc       Date:  1972-05-17       Impact factor: 15.419

6.  Equilibrium and kinetic evidence for a transition between six- and five-coordinate ferrous heme in the nitric oxide derivative of Aplysia myoglobin.

Authors:  P Ascenzi; G M Giacometti; E Antonini; G Rotilio; M Brunori
Journal:  J Biol Chem       Date:  1981-06-10       Impact factor: 5.157

7.  Nitrosyl adducts of FixL as probes of heme environment.

Authors:  K R Rodgers; G S Lukat-Rodgers; L Tang
Journal:  J Biol Inorg Chem       Date:  2000-10       Impact factor: 3.358

8.  An infrared study of NO bonding to heme B and hemoglobin A. Evidence for inositol hexaphosphate induced cleavage of proximal histidine to iron bonds.

Authors:  J C Maxwell; W S Caughey
Journal:  Biochemistry       Date:  1976-01-27       Impact factor: 3.162

9.  Activation of purified guanylate cyclase by nitric oxide requires heme. Comparison of heme-deficient, heme-reconstituted and heme-containing forms of soluble enzyme from bovine lung.

Authors:  L J Ignarro; J N Degnan; W H Baricos; P J Kadowitz; M S Wolin
Journal:  Biochim Biophys Acta       Date:  1982-09-17

10.  Spectroscopic studies of myoglobin at low pH: heme structure and ligation.

Authors:  J T Sage; D Morikis; P M Champion
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

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  40 in total

1.  Probing heme vibrational anisotropy: an imidazole orientation effect?

Authors:  Qian Peng; Ming Li; Chuanjiang Hu; Jeffrey W Pavlik; Allen G Oliver; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-09-10       Impact factor: 5.165

2.  Interplay of structure and vibrational dynamics in six-coordinate heme nitrosyls.

Authors:  Nathan J Silvernail; Alexander Barabanschikov; Jeffrey W Pavlik; Bruce C Noll; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; J Timothy Sage; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2007-02-02       Impact factor: 15.419

3.  A combined NRVS and DFT study of Fe(IV)=O model complexes: a diagnostic method for the elucidation of non-heme iron enzyme intermediates.

Authors:  Caleb B Bell; Shaun D Wong; Yuming Xiao; Eric J Klinker; Adam L Tenderholt; Matt C Smith; Jan-Uwe Rohde; Lawrence Que; Stephen P Cramer; Edward I Solomon
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  Differential sensing of protein influences by NO and CO vibrations in heme adducts.

Authors:  Mohammed Ibrahim; Changliang Xu; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2006-12-27       Impact factor: 15.419

5.  Nuclear resonance vibrational spectroscopy applied to [Fe(OEP)(NO)]: the vibrational assignments of five-coordinate ferrous heme-nitrosyls and implications for electronic structure.

Authors:  Nicolai Lehnert; Mary Grace I Galinato; Florian Paulat; George B Richter-Addo; Wolfgang Sturhahn; Nan Xu; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-05-03       Impact factor: 5.165

6.  Vibrational Dynamics of Biological Molecules: Multi-quantum Contributions.

Authors:  Bogdan M Leu; J Timothy Sage; Marek Z Zgierski; Graeme R A Wyllie; Mary K Ellison; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin
Journal:  J Phys Chem Solids       Date:  2005-12       Impact factor: 3.995

7.  High-Frequency Fe-H and Fe-H2 Modes in a trans-Fe(η2-H2)(H) Complex: A Speed Record for Nuclear Resonance Vibrational Spectroscopy.

Authors:  Ming-Hsi Chiang; Vladimir Pelmenschikov; Leland B Gee; Yu-Chiao Liu; Chang-Chih Hsieh; Hongxin Wang; Yoshitaka Yoda; Hiroaki Matsuura; Lei Li; Stephen P Cramer
Journal:  Inorg Chem       Date:  2020-12-23       Impact factor: 5.165

8.  Extended X-ray absorption fine structure and nuclear resonance vibrational spectroscopy reveal that NifB-co, a FeMo-co precursor, comprises a 6Fe core with an interstitial light atom.

Authors:  Simon J George; Robert Y Igarashi; Yuming Xiao; Jose A Hernandez; Marie Demuez; Dehua Zhao; Yoshitaka Yoda; Paul W Ludden; Luis M Rubio; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2008-04-02       Impact factor: 15.419

9.  Nuclear resonance vibrational spectroscopy and electron paramagnetic resonance spectroscopy of 57Fe-enriched [FeFe] hydrogenase indicate stepwise assembly of the H-cluster.

Authors:  Jon M Kuchenreuther; Yisong Guo; Hongxin Wang; William K Myers; Simon J George; Christine A Boyke; Yoshitaka Yoda; E Ercan Alp; Jiyong Zhao; R David Britt; James R Swartz; Stephen P Cramer
Journal:  Biochemistry       Date:  2013-01-24       Impact factor: 3.162

10.  Effects of imidazole deprotonation on vibrational spectra of high-spin iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Qian Peng; Nathan J Silvernail; Alexander Barabanschikov; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-03-07       Impact factor: 5.165

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