Literature DB >> 28921972

What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

W Robert Scheidt1, Jianfeng Li2, J Timothy Sage3.   

Abstract

Nuclear resonance vibrational spectroscopy (NRVS; also known as nuclear inelastic scattering, NIS) is a synchrotron-based method that reveals the full spectrum of vibrational dynamics for Mössbauer nuclei. Another major advantage, in addition to its completeness (no arbitrary optical selection rules), is the unique selectivity of NRVS. The basics of this recently developed technique are first introduced with descriptions of the experimental requirements and data analysis including the details of mode assignments. We discuss the use of NRVS to probe 57Fe at the center of heme and heme protein derivatives yielding the vibrational density of states for the iron. The application to derivatives with diatomic ligands (O2, NO, CO, CN-) shows the strong capabilities of identifying mode character. The availability of the complete vibrational spectrum of iron allows the identification of modes not available by other techniques. This permits the correlation of frequency with other physical properties. A significant example is the correlation we find between the Fe-Im stretch in six-coordinate Fe(XO) hemes and the trans Fe-N(Im) bond distance, not possible previously. NRVS also provides uniquely quantitative insight into the dynamics of the iron. For example, it provides a model-independent means of characterizing the strength of iron coordination. Prediction of the temperature-dependent mean-squared displacement from NRVS measurements yields a vibrational "baseline" for Fe dynamics that can be compared with results from techniques that probe longer time scales to yield quantitative insights into additional dynamical processes.

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Year:  2017        PMID: 28921972      PMCID: PMC5639469          DOI: 10.1021/acs.chemrev.7b00295

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  116 in total

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Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

Review 2.  Nitric oxide in biological denitrification: Fe/Cu metalloenzyme and metal complex NO(x) redox chemistry.

Authors:  Ian M Wasser; Simon de Vries; Pierre Moënne-Loccoz; Imke Schröder; Kenneth D Karlin
Journal:  Chem Rev       Date:  2002-04       Impact factor: 60.622

3.  Hemoxygenase-2 is an oxygen sensor for a calcium-sensitive potassium channel.

Authors:  Sandile E J Williams; Phillippa Wootton; Helen S Mason; Jonathan Bould; David E Iles; Daniela Riccardi; Chris Peers; Paul J Kemp
Journal:  Science       Date:  2004-11-04       Impact factor: 47.728

4.  Resonance Raman studies of hemoglobin complexes with nitric oxide, nitrosobenzene and nitrosomethane: observation of the metal-ligand vibrations.

Authors:  G Chottard; D Mansuy
Journal:  Biochem Biophys Res Commun       Date:  1977-08-22       Impact factor: 3.575

5.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

6.  Characterization of the periplasmic heme-binding protein shut from the heme uptake system of Shigella dysenteriae.

Authors:  Suntara Eakanunkul; Gudrun S Lukat-Rodgers; Suganya Sumithran; Arundhati Ghosh; Kenton R Rodgers; John H Dawson; Angela Wilks
Journal:  Biochemistry       Date:  2005-10-04       Impact factor: 3.162

7.  Spectroscopic identification of reactive porphyrin motions.

Authors:  Alexander Barabanschikov; Alexander Demidov; Minoru Kubo; Paul M Champion; J Timothy Sage; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

8.  Probing vibrational anisotropy with nuclear resonance vibrational spectroscopy.

Authors:  Jeffrey W Pavlik; Alexander Barabanschikov; Allen G Oliver; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-14       Impact factor: 15.336

9.  Vibrational assignments of six-coordinate ferrous heme nitrosyls: new insight from nuclear resonance vibrational spectroscopy.

Authors:  Florian Paulat; Timothy C Berto; Serena DeBeer George; Lauren Goodrich; V K K Praneeth; Corinne D Sulok; Nicolai Lehnert
Journal:  Inorg Chem       Date:  2008-12-15       Impact factor: 5.165

10.  Vibrational probes and determinants of the S = 0 ⇌ S = 2 spin crossover in five-coordinate [Fe(TPP)(CN)]-.

Authors:  Jianfeng Li; Qian Peng; Alexander Barabanschikov; Jeffrey W Pavlik; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-10-19       Impact factor: 5.165

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  9 in total

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Authors:  Ming-Hsi Chiang; Vladimir Pelmenschikov; Leland B Gee; Yu-Chiao Liu; Chang-Chih Hsieh; Hongxin Wang; Yoshitaka Yoda; Hiroaki Matsuura; Lei Li; Stephen P Cramer
Journal:  Inorg Chem       Date:  2020-12-23       Impact factor: 5.165

2.  Nuclear Resonance Vibrational Spectroscopy Definition of O2 Intermediates in an Extradiol Dioxygenase: Correlation to Crystallography and Reactivity.

Authors:  Kyle D Sutherlin; Yuko Wasada-Tsutsui; Michael M Mbughuni; Melanie S Rogers; Kiyoung Park; Lei V Liu; Yeonju Kwak; Martin Srnec; Lars H Böttger; Mathieu Frenette; Yoshitaka Yoda; Yasuhiro Kobayashi; Masayuki Kurokuzu; Makina Saito; Makoto Seto; Michael Hu; Jiyong Zhao; E Ercan Alp; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-11-26       Impact factor: 15.419

3.  Shear stress regulates the migration of suspended breast cancer cells by nuclear lamina protein A/C and large tumor suppressor through yes-associated protein.

Authors:  Boyuan Zhao; Mei Tang; Yonggang Lv
Journal:  Hum Cell       Date:  2022-01-05       Impact factor: 4.174

4.  Nuclear Resonance Vibrational Spectroscopy: A Modern Tool to Pinpoint Site-Specific Cooperative Processes.

Authors:  Hongxin Wang; Artur Braun; Stephen P Cramer; Leland B Gee; Yoshitaka Yoda
Journal:  Catalysts       Date:  2021-08-02       Impact factor: 4.501

5.  SciPhon: a data analysis software for nuclear resonant inelastic X-ray scattering with applications to Fe, Kr, Sn, Eu and Dy.

Authors:  Nicolas Dauphas; Michael Y Hu; Erik M Baker; Justin Hu; Francois L H Tissot; E Ercan Alp; Mathieu Roskosz; Jiyong Zhao; Wenli Bi; Jin Liu; Jung Fu Lin; Nicole X Nie; Andrew Heard
Journal:  J Synchrotron Radiat       Date:  2018-08-21       Impact factor: 2.616

6.  Vibrational Perturbation of the [FeFe] Hydrogenase H-Cluster Revealed by 13C2H-ADT Labeling.

Authors:  Vladimir Pelmenschikov; James A Birrell; Leland B Gee; Casseday P Richers; Edward J Reijerse; Hongxin Wang; Simon Arragain; Nakul Mishra; Yoshitaka Yoda; Hiroaki Matsuura; Lei Li; Kenji Tamasaku; Thomas B Rauchfuss; Wolfgang Lubitz; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2021-05-27       Impact factor: 15.419

7.  Insights from 125Te and 57Fe nuclear resonance vibrational spectroscopy: a [4Fe-4Te] cluster from two points of view.

Authors:  Florian Wittkamp; Nakul Mishra; Hongxin Wang; Hans-Christian Wille; René Steinbrügge; Martin Kaupp; Stephen P Cramer; Ulf-Peter Apfel; Vladimir Pelmenschikov
Journal:  Chem Sci       Date:  2019-06-24       Impact factor: 9.825

8.  Vibrational characterization of a diiron bridging hydride complex - a model for hydrogen catalysis.

Authors:  Leland B Gee; Vladimir Pelmenschikov; Hongxin Wang; Nakul Mishra; Yu-Chiao Liu; Yoshitaka Yoda; Kenji Tamasaku; Ming-Hsi Chiang; Stephen P Cramer
Journal:  Chem Sci       Date:  2020-05-06       Impact factor: 9.825

9.  A Combined Spectroscopic and Computational Study on the Mechanism of Iron-Catalyzed Aminofunctionalization of Olefins Using Hydroxylamine Derived N-O Reagent as the "Amino" Source and "Oxidant".

Authors:  Sayanti Chatterjee; Ingolf Harden; Giovanni Bistoni; Rebeca G Castillo; Sonia Chabbra; Maurice van Gastel; Alexander Schnegg; Eckhard Bill; James A Birrell; Bill Morandi; Frank Neese; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2022-02-04       Impact factor: 15.419

  9 in total

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