Literature DB >> 21744919

Spectroscopic identification of reactive porphyrin motions.

Alexander Barabanschikov1, Alexander Demidov, Minoru Kubo, Paul M Champion, J Timothy Sage, Jiyong Zhao, Wolfgang Sturhahn, E Ercan Alp.   

Abstract

Nuclear resonance vibrational spectroscopy (NRVS) reveals the vibrational dynamics of a Mössbauer probe nucleus. Here, (57)Fe NRVS measurements yield the complete spectrum of Fe vibrations in halide complexes of iron porphyrins. Iron porphine serves as a useful symmetric model for the more complex spectrum of asymmetric heme molecules that contribute to numerous essential biological processes. Quantitative comparison with the vibrational density of states (VDOS) predicted for the Fe atom by density functional theory calculations unambiguously identifies the correct sextet ground state in each case. These experimentally authenticated calculations then provide detailed normal mode descriptions for each observed vibration. All Fe-ligand vibrations are clearly identified despite the high symmetry of the Fe environment. Low frequency molecular distortions and acoustic lattice modes also contribute to the experimental signal. Correlation matrices compare vibrations between different molecules and yield a detailed picture of how heme vibrations evolve in response to (a) halide binding and (b) asymmetric placement of porphyrin side chains. The side chains strongly influence the energetics of heme doming motions that control Fe reactivity, which are easily observed in the experimental signal.

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Year:  2011        PMID: 21744919      PMCID: PMC3144962          DOI: 10.1063/1.3598473

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  50 in total

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Authors:  Uwe Bergmann; Wolfgang Sturhahn; Donald E Linn; Francis E Jenney; Michael W W Adams; Kresimir Rupnik; Brian J Hales; Ercan E Alp; Aaron Mayse; Stephen P Cramer
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Review 2.  High-level ab initio calculations on the energetics of low-lying spin states of biologically relevant transition metal complexes: a first progress report.

Authors:  Abhik Ghosh; Peter R Taylor
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3.  THE STRUCTURE OF ALPHA-CHLOROHEMIN.

Authors:  D F KOENIG
Journal:  Acta Crystallogr       Date:  1965-04-10

4.  Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Dan Ionascu; Changyuan Lu; Robert K Poole; Syun-Ru Yeh; Paul M Champion
Journal:  J Am Chem Soc       Date:  2008-03-20       Impact factor: 15.419

5.  Insights into current limitations of density functional theory.

Authors:  Aron J Cohen; Paula Mori-Sánchez; Weitao Yang
Journal:  Science       Date:  2008-08-08       Impact factor: 47.728

6.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

7.  Probing vibrational anisotropy with nuclear resonance vibrational spectroscopy.

Authors:  Jeffrey W Pavlik; Alexander Barabanschikov; Allen G Oliver; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-14       Impact factor: 15.336

8.  Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

Authors:  Bogdan M Leu; Marek Z Zgierski; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

9.  Investigations of vibrational coherence in the low-frequency region of ferric heme proteins.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Paul M Champion
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

10.  Iron normal mode dynamics in a porphyrin-imidazole model for deoxyheme proteins.

Authors:  Brajesh K Rai; Stephen M Durbin; Earl W Prohofsky; J Timothy Sage; Mary K Ellison; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-11-12
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  7 in total

1.  Probing heme vibrational anisotropy: an imidazole orientation effect?

Authors:  Qian Peng; Ming Li; Chuanjiang Hu; Jeffrey W Pavlik; Allen G Oliver; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-09-10       Impact factor: 5.165

2.  Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Alexander Barabanschikov; Mary K Ellison; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; Marek Z Zgierski; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-01-13       Impact factor: 5.165

Review 3.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

4.  Effects of imidazole deprotonation on vibrational spectra of high-spin iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Qian Peng; Nathan J Silvernail; Alexander Barabanschikov; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-03-07       Impact factor: 5.165

5.  Quantitative vibrational dynamics of the metal site in a tin porphyrin: an IR, NRVS, and DFT study.

Authors:  Bogdan M Leu; Marek Z Zgierski; Christian Bischoff; Ming Li; Michael Y Hu; Jiyong Zhao; Steve W Martin; Esen Ercan Alp; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-08-20       Impact factor: 5.165

6.  Vibrational probes and determinants of the S = 0 ⇌ S = 2 spin crossover in five-coordinate [Fe(TPP)(CN)]-.

Authors:  Jianfeng Li; Qian Peng; Alexander Barabanschikov; Jeffrey W Pavlik; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-10-19       Impact factor: 5.165

7.  Anisotropic iron motion in nitrosyl iron porphyrinates: natural and synthetic hemes.

Authors:  Jeffrey W Pavlik; Qian Peng; Nathan J Silvernail; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2014-02-14       Impact factor: 5.165

  7 in total

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