Literature DB >> 24160761

Sensitivity and resolution enhancement of oriented solid-state NMR: application to membrane proteins.

T Gopinath1, Kaustubh R Mote, Gianluigi Veglia.   

Abstract

Oriented solid-state NMR (O-ssNMR) spectroscopy is a major technique for the high-resolution analysis of the structure and topology of transmembrane proteins in native-like environments. Unlike magic angle spinning (MAS) techniques, O-ssNMR spectroscopy requires membrane protein preparations that are uniformly oriented (mechanically or magnetically) so that anisotropic NMR parameters, such as dipolar and chemical shift interactions, can be measured to determine structure and orientation of membrane proteins in lipid bilayers. Traditional sample preparations involving mechanically aligned lipids often result in short relaxation times which broaden the (15)N resonances and encumber the manipulation of nuclear spin coherences. The introduction of lipid bicelles as membrane mimicking systems has changed this scenario, and the more favorable relaxation properties of membrane protein (15)N and (13)C resonances make it possible to develop new, more elaborate pulse sequences for higher spectral resolution and sensitivity. Here, we describe our recent progress in the optimization of O-ssNMR pulse sequences. We explain the theory behind these experiments, demonstrate their application to small and medium size proteins, and describe the technical details for setting up these new experiments on the new generation of NMR spectrometers.
Copyright © 2013 Elsevier B.V. All rights reserved.

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Keywords:  4-pentyl-4′-cyanobiphenyl; 5CB; BLEW; Burum Linser Ernst Windowless; CP; CSA; Chemical shift anisotropy; DC; DTRF; Dipolar couplings; FSLG; Frequency-Switched Lee-Goldberg; HETCOR; HIMSELF; Heteronuclear Isotropic Mixing Separated Local Field; LG; Lee-Goldberg; MAS; MLEV; MSHOT; Magic Sandwich Higher Order Truncation; Malcolm Levitt Decoupling Sequence; N-acetyl-leucine; N-acetyl-valine-leucine; NAL; NAVL; O-ssNMR; Oriented solid-state NMR; PDSD; PELF; PI; PISEMA; PLN; Proton Evolved Local Field; RMS; Resolution enhancement; SAMPI4; SE; SLN; SNR; Sarcolipin; Selective Averaging Magic Sandwich with Polarization Inversion; Sensitivity enhancement; WIM24; Windowless Isotropic Mixing 24; chemical shift anisotropy; cross polarization; dipolar coupling; doubly tilted rotating frame; heteronuclear correlation; magic angle spinning; oriented solid-state NMR; phospholamban; polarization inversion; polarization inversion spin exchange at the magic angle; proton driven spin diffusion; root mean square; sensitivity enhancement; signal to noise ratio

Mesh:

Substances:

Year:  2013        PMID: 24160761      PMCID: PMC3850070          DOI: 10.1016/j.pnmrs.2013.07.004

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  68 in total

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3.  Sensitivity and resolution enhancement in solid-state NMR spectroscopy of bicelles.

Authors:  Sergey V Dvinskikh; Kazutoshi Yamamoto; Ulrich H N Dürr; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2006-11-02       Impact factor: 2.229

4.  Bicelle samples for solid-state NMR of membrane proteins.

Authors:  Anna A De Angelis; Stanley J Opella
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 5.  Structure elucidation of membrane-associated peptides and proteins in oriented bilayers by solid-state NMR spectroscopy.

Authors:  Akira Naito
Journal:  Solid State Nucl Magn Reson       Date:  2009-07-08       Impact factor: 2.293

6.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

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9.  Two-dimensional solid-state NMR reveals two topologies of sarcolipin in oriented lipid bilayers.

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  11 in total

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3.  Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
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4.  Probing Residue-Specific Water-Protein Interactions in Oriented Lipid Membranes via Solid-State NMR Spectroscopy.

Authors:  Alysha Dicke; T Gopinath; Yingjie Wang; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2016-10-18       Impact factor: 2.991

5.  Orphan spin polarization: A catalyst for high-throughput solid-state NMR spectroscopy of proteins.

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6.  Solid-state NMR of the Yersinia pestis outer membrane protein Ail in lipid bilayer nanodiscs sedimented by ultracentrifugation.

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Review 8.  Spatial reorientation experiments for NMR of solids and partially oriented liquids.

Authors:  Rachel W Martin; John E Kelly; Kelsey A Collier
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-10-23       Impact factor: 9.795

9.  Correlating lipid bilayer fluidity with sensitivity and resolution of polytopic membrane protein spectra by solid-state NMR spectroscopy.

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10.  A theoretical assessment of structure determination of multi-span membrane proteins by oriented sample solid-state NMR spectroscopy.

Authors:  Daniel K Weber; Gianluigi Veglia
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