Literature DB >> 33162560

A theoretical assessment of structure determination of multi-span membrane proteins by oriented sample solid-state NMR spectroscopy.

Daniel K Weber1, Gianluigi Veglia1,2.   

Abstract

Oriented sample solid state NMR (OS-ssNMR) spectroscopy allows direct determination of the structure and topology of membrane proteins reconstituted into aligned lipid bilayers. While OS-ssNMR theoretically has no upper size limit, its application to multi-span membrane proteins has not been established since most studies have been restricted to single or dual span proteins and peptides. Here, we present a critical assessment of the application of this method to multi-span membrane proteins. We used molecular dynamics simulations to back-calculate [15N-1H] separated local field (SLF) spectra from a G protein-coupled receptor (GPCR) and show that fully resolved spectra can be obtained theoretically for a multi-span membrane protein with currently achievable resonance linewidths.

Entities:  

Year:  2019        PMID: 33162560      PMCID: PMC7643874          DOI: 10.1071/CH19307

Source DB:  PubMed          Journal:  Aust J Chem        ISSN: 0004-9425            Impact factor:   1.321


  87 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

2.  Influence of whole-body dynamics on 15N PISEMA NMR spectra of membrane proteins: a theoretical analysis.

Authors:  Santi Esteban-Martín; Erik Strandberg; Gustavo Fuertes; Anne S Ulrich; Jesús Salgado
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

3.  Orientation of the Escherichia coli outer membrane protein OmpX in phospholipid bilayer membranes determined by solid-State NMR.

Authors:  Radhakrishnan Mahalakshmi; Francesca M Marassi
Journal:  Biochemistry       Date:  2008-06-24       Impact factor: 3.162

4.  Solid-State NMR/Dynamic Nuclear Polarization of Polypeptides in Planar Supported Lipid Bilayers.

Authors:  Evgeniy S Salnikov; Hiba Sarrouj; Christian Reiter; Christopher Aisenbrey; Armin Purea; Fabien Aussenac; Olivier Ouari; Paul Tordo; Illya Fedotenko; Frank Engelke; Burkhard Bechinger
Journal:  J Phys Chem B       Date:  2015-11-05       Impact factor: 2.991

5.  Activation mechanism of the β2-adrenergic receptor.

Authors:  Ron O Dror; Daniel H Arlow; Paul Maragakis; Thomas J Mildorf; Albert C Pan; Huafeng Xu; David W Borhani; David E Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-26       Impact factor: 11.205

6.  Structure and orientation of sarcolipin in lipid environments.

Authors:  Alessandro Mascioni; Christine Karim; George Barany; David D Thomas; Gianluigi Veglia
Journal:  Biochemistry       Date:  2002-01-15       Impact factor: 3.162

7.  Sensitivity enhancement in static solid-state NMR experiments via single- and multiple-quantum dipolar coherences.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

8.  Analysis of the amide (15)N chemical shift tensor of the C(alpha) tetrasubstituted constituent of membrane-active peptaibols, the alpha-aminoisobutyric acid residue, compared to those of di- and tri-substituted proteinogenic amino acid residues.

Authors:  Evgeniy Salnikov; Philippe Bertani; Jan Raap; Burkhard Bechinger
Journal:  J Biomol NMR       Date:  2009-10-11       Impact factor: 2.835

9.  Conformation and orientation of gramicidin a in oriented phospholipid bilayers measured by solid state carbon-13 NMR.

Authors:  B A Cornell; F Separovic; A J Baldassi; R Smith
Journal:  Biophys J       Date:  1988-01       Impact factor: 4.033

10.  Structure and function of an irreversible agonist-β(2) adrenoceptor complex.

Authors:  Daniel M Rosenbaum; Cheng Zhang; Joseph A Lyons; Ralph Holl; David Aragao; Daniel H Arlow; Søren G F Rasmussen; Hee-Jung Choi; Brian T Devree; Roger K Sunahara; Pil Seok Chae; Samuel H Gellman; Ron O Dror; David E Shaw; William I Weis; Martin Caffrey; Peter Gmeiner; Brian K Kobilka
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

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  1 in total

1.  A kink in DWORF helical structure controls the activation of the sarcoplasmic reticulum Ca2+-ATPase.

Authors:  U Venkateswara Reddy; Daniel K Weber; Songlin Wang; Erik K Larsen; Tata Gopinath; Alfonso De Simone; Seth Robia; Gianluigi Veglia
Journal:  Structure       Date:  2021-12-06       Impact factor: 5.006

  1 in total

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