Literature DB >> 20667827

Charged or aromatic anchor residue dependence of transmembrane peptide tilt.

Vitaly V Vostrikov1, Anna E Daily, Denise V Greathouse, Roger E Koeppe.   

Abstract

The membrane-spanning segments of integral membrane proteins often are flanked by aromatic or charged amino acid residues, which may "anchor" the transmembrane orientation. Single spanning transmembrane peptides such as those of the WALP family, acetyl-GWW(LA)(n)LWWA-amide, furthermore adopt a moderate average tilt within lipid bilayer membranes. To understand the anchor residue dependence of the tilt, we introduce Leu-Ala "spacers" between paired anchors and in some cases replace the outer tryptophans. The resulting peptides, acetyl-GX(2)ALW(LA)(6)LWLAX(22)A-amide, have Trp, Lys, Arg, or Gly in the two X positions. The apparent average orientations of the core helical sequences were determined in oriented phosphatidylcholine bilayer membranes of varying thickness using solid-state (2)H NMR spectroscopy. When X is Lys, Arg, or Gly, the direction of the tilt is essentially constant in different lipids and presumably is dictated by the tryptophans (Trp(5) and Trp(19)) that flank the inner helical core. The Leu-Ala spacers are no longer helical. The magnitude of the apparent helix tilt furthermore scales nicely with the bilayer thickness except when X is Trp. When X is Trp, the direction of tilt is less well defined in each phosphatidylcholine bilayer and varies up to 70° among 1,2-dioleoyl-sn-glycero-3-phosphocholine, 1,2-dimyristoyl-sn-glycero-3-phosphocholine, and 1,2-dilauroyl-sn-glycero-3-phosphocholine bilayer membranes. Indeed, the X = Trp case parallels earlier observations in which WALP family peptides having multiple Trp anchors show little dependence of the apparent tilt magnitude on bilayer thickness. The results shed new light on the interactions of arginine, lysine, tryptophan, and even glycine at lipid bilayer membrane interfaces.

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Year:  2010        PMID: 20667827      PMCID: PMC2951244          DOI: 10.1074/jbc.M110.152470

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

1.  The effects of hydrophobic mismatch between phosphatidylcholine bilayers and transmembrane alpha-helical peptides depend on the nature of interfacially exposed aromatic and charged residues.

Authors:  Maurits R R de Planque; Jan-Willem P Boots; Dirk T S Rijkers; Rob M J Liskamp; Denise V Greathouse; J Antoinette Killian
Journal:  Biochemistry       Date:  2002-07-02       Impact factor: 3.162

Review 2.  Amino acid-protecting groups.

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Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

3.  Orientational landscapes of peptides in membranes: prediction of (2)H NMR couplings in a dynamic context.

Authors:  Santi Esteban-Martín; Diana Giménez; Gustavo Fuertes; Jesús Salgado
Journal:  Biochemistry       Date:  2009-12-08       Impact factor: 3.162

4.  Design and characterization of gramicidin channels.

Authors:  D V Greathouse; R E Koeppe; L L Providence; S Shobana; O S Andersen
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

5.  Investigations of polypeptide rotational diffusion in aligned membranes by 2H and 15N solid-state NMR spectroscopy.

Authors:  Christopher Aisenbrey; Burkhard Bechinger
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

6.  Increasing the sensitivity of cryoprobe protein NMR experiments by using the sole low-conductivity arginine glutamate salt.

Authors:  Guillaume M Hautbergue; Alexander P Golovanov
Journal:  J Magn Reson       Date:  2008-01-03       Impact factor: 2.229

7.  Helical distortion in tryptophan- and lysine-anchored membrane-spanning alpha-helices as a function of hydrophobic mismatch: a solid-state deuterium NMR investigation using the geometric analysis of labeled alanines method.

Authors:  Anna E Daily; Denise V Greathouse; Patrick C A van der Wel; Roger E Koeppe
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

8.  Comparison of "Polarization inversion with spin exchange at magic angle" and "geometric analysis of labeled alanines" methods for transmembrane helix alignment.

Authors:  Vitaly V Vostrikov; Christopher V Grant; Anna E Daily; Stanley J Opella; Roger E Koeppe
Journal:  J Am Chem Soc       Date:  2008-09-03       Impact factor: 15.419

9.  Oligotryptophan-tagged antimicrobial peptides and the role of the cationic sequence.

Authors:  Adam A Strömstedt; Mukesh Pasupuleti; Artur Schmidtchen; Martin Malmsten
Journal:  Biochim Biophys Acta       Date:  2009-06-06

10.  The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology.

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Journal:  EMBO J       Date:  1986-11       Impact factor: 11.598

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  37 in total

1.  Membrane-Induced p Ka Shifts in wt-pHLIP and Its L16H Variant.

Authors:  Diogo Vila-Viçosa; Tomás F D Silva; Gregory Slaybaugh; Yana K Reshetnyak; Oleg A Andreev; Miguel Machuqueiro
Journal:  J Chem Theory Comput       Date:  2018-05-17       Impact factor: 6.006

2.  Solid-state NMR ensemble dynamics as a mediator between experiment and simulation.

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Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

3.  Tyrosine replacing tryptophan as an anchor in GWALP peptides.

Authors:  Nicholas J Gleason; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-03-05       Impact factor: 3.162

4.  Properties of membrane-incorporated WALP peptides that are anchored on only one end.

Authors:  Johanna M Rankenberg; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-12-03       Impact factor: 3.162

5.  Canonical azimuthal rotations and flanking residues constrain the orientation of transmembrane helices.

Authors:  Orlando L Sánchez-Muñoz; Erik Strandberg; E Esteban-Martín; Stephan L Grage; Anne S Ulrich; Jesús Salgado
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

6.  Influence of Lipid Saturation, Hydrophobic Length and Cholesterol on Double-Arginine-Containing Helical Peptides in Bilayer Membranes.

Authors:  Karli Lipinski; Matthew J McKay; Fahmida Afrose; Ashley N Martfeld; Roger E Koeppe; Denise V Greathouse
Journal:  Chembiochem       Date:  2019-09-18       Impact factor: 3.164

7.  Influence of glutamic acid residues and pH on the properties of transmembrane helices.

Authors:  Venkatesan Rajagopalan; Denise V Greathouse; Roger E Koeppe
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-01-07       Impact factor: 3.747

8.  Accommodation of a central arginine in a transmembrane peptide by changing the placement of anchor residues.

Authors:  Vitaly V Vostrikov; Benjamin A Hall; Mark S P Sansom; Roger E Koeppe
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9.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

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Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

10.  Ionization Properties of Histidine Residues in the Lipid Bilayer Membrane Environment.

Authors:  Ashley N Martfeld; Denise V Greathouse; Roger E Koeppe
Journal:  J Biol Chem       Date:  2016-07-20       Impact factor: 5.157

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