Literature DB >> 31463642

Improving the quality of oriented membrane protein spectra using heat-compensated separated local field experiments.

Songlin Wang1, T Gopinath1, Gianluigi Veglia2,3.   

Abstract

Oriented sample solid-state NMR (OS-ssNMR) spectroscopy is a powerful technique to determine the topology of membrane proteins in oriented lipid bilayers. Separated local field (SLF) experiments are central to this technique as they provide first-order orientational restraints, i.e., dipolar couplings and anisotropic chemical shifts. Despite the use of low-E (or E-free) probes, the heat generated during the execution of 2D and 3D SLF pulse sequences causes sizeable line-shape distortions. Here, we propose a new heat-compensated SE-SAMPI4 (hcSE-SAMPI4) pulse sequence that holds the temperature constant for the duration of the experiment. This modification of the SE-SAMPI4 results in sharper and more intense resonances without line-shape distortions. The spectral improvements are even more apparent when paramagnetic relaxation agents are used to speed up data collection. We tested the hcSE-SAMPI4 pulse sequence on a single-span membrane protein, sarcolipin (SLN), reconstituted in magnetically aligned lipid bicelles. In addition to eliminating peak distortions, the hcSE-SAMPI4 experiment increased the average signal-to-noise ratio by 20% with respect to the original SE-SAMPI4.

Entities:  

Keywords:  Bicelles; Heat compensation; Membrane proteins; Oriented-sample solid-state NMR; Paramagnetic relaxation enhancement; SAMPI4; Sarcolipin

Mesh:

Substances:

Year:  2019        PMID: 31463642      PMCID: PMC6861693          DOI: 10.1007/s10858-019-00273-1

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  48 in total

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Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

2.  Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers.

Authors:  Byungsu Kwon; Myungwoon Lee; Alan J Waring; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-06-22       Impact factor: 15.419

3.  Use of a copper-chelated lipid speeds up NMR measurements from membrane proteins.

Authors:  Kazutoshi Yamamoto; Jiadi Xu; Karen E Kawulka; John C Vederas; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-05-26       Impact factor: 15.419

4.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

Review 5.  Applications of NMR to membrane proteins.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

6.  Two-dimensional solid-state NMR reveals two topologies of sarcolipin in oriented lipid bilayers.

Authors:  Jarrod J Buffy; Nathaniel J Traaseth; Alessandro Mascioni; Peter L Gor'kov; Eduard Y Chekmenev; William W Brey; Gianluigi Veglia
Journal:  Biochemistry       Date:  2006-09-12       Impact factor: 3.162

7.  "Bicellar" lipid mixtures as used in biochemical and biophysical studies.

Authors:  John Katsaras; Thad A Harroun; Jeremy Pencer; Mu-Ping Nieh
Journal:  Naturwissenschaften       Date:  2005-08

8.  Sarcolipin overexpression in rat slow twitch muscle inhibits sarcoplasmic reticulum Ca2+ uptake and impairs contractile function.

Authors:  A Russell Tupling; Michio Asahi; David H MacLennan
Journal:  J Biol Chem       Date:  2002-09-16       Impact factor: 5.157

9.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

Authors:  Chang Liu; Jing Liu; Xiaojun Xu; ShengQi Xiang; Shenlin Wang
Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

10.  Defining the intramembrane binding mechanism of sarcolipin to calcium ATPase using solution NMR spectroscopy.

Authors:  Jarrod J Buffy; Bethany A Buck-Koehntop; Fernando Porcelli; Nathaniel J Traaseth; David D Thomas; Gianluigi Veglia
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

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  3 in total

1.  Magnetic Alignment of Polymer Nanodiscs Probed by Solid-State NMR Spectroscopy.

Authors:  Thirupathi Ravula; JaeWoong Kim; Dong-Kuk Lee; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2020-01-30       Impact factor: 3.882

2.  A kink in DWORF helical structure controls the activation of the sarcoplasmic reticulum Ca2+-ATPase.

Authors:  U Venkateswara Reddy; Daniel K Weber; Songlin Wang; Erik K Larsen; Tata Gopinath; Alfonso De Simone; Seth Robia; Gianluigi Veglia
Journal:  Structure       Date:  2021-12-06       Impact factor: 5.006

3.  Structural basis for sarcolipin's regulation of muscle thermogenesis by the sarcoplasmic reticulum Ca2+-ATPase.

Authors:  Songlin Wang; Tata Gopinath; Erik K Larsen; Daniel K Weber; Caitlin Walker; Venkateswara Reddy Uddigiri; Kaustubh R Mote; Sanjaya K Sahoo; Muthu Periasamy; Gianluigi Veglia
Journal:  Sci Adv       Date:  2021-11-26       Impact factor: 14.136

  3 in total

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